Alternatives and similar repositories for torch_integrated_cell

Users that are interested in torch_integrated_cell are comparing it to the libraries listed below

• okraus / DeepLoc
  This repository contains the code, and access to the pretrained models and datasets for the paper: "Automated analysis of high-content mi…
  ☆50Updated 8 years ago
• theislab / deepflow
  This code contains the neural network implementation from the nature communication manuscript NCOMMS-16-25447A.
  ☆33Updated 7 years ago
• AllenCellModeling / pytorch_integrated_cell
  Integrated Cell project implemented in pytorch
  ☆44Updated 2 years ago
• jmschrei / rambutan
  Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.
  ☆21Updated 6 years ago
• psteinb / b3get
  a python module to download Broad Bioimage Benchmark Collection images
  ☆24Updated 6 years ago
• CovertLab / DeepCell
  ☆49Updated 7 years ago
• tariqdaouda / FiberedAE
  Implementation of Fibered Auto-Encoders
  ☆9Updated 4 years ago
• kundajelab / cs273b
  CS273B Deep Learning for Genomics Course Materials
  ☆33Updated 4 years ago
• marrlab / HematoFatePrediction
  Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4…
  ☆20Updated 3 years ago
• hammerlab / cytokit
  Microscopy Image Cytometry Toolkit
  ☆116Updated 3 years ago
• gigascience / paper-bray2017
  Source code from Bray et al., (2017) A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Pa…
  ☆42Updated last year
• jssong-lab / maxEnt
  ☆11Updated 7 years ago
• harvardnlp / regulatory-prediction
  Code and Data to accompany "Dilated Convolutions for Modeling Long-Distance Genomic Dependencies", presented at the ICML 2017 Workshop on…
  ☆29Updated 7 years ago
• piximi / application_archived
  A web application for classifying objects
  ☆29Updated 3 years ago
• carpenterlab / unet4nuclei
  U-net based segmentation of nuclei in microscopy images
  ☆53Updated 6 years ago
• p-koo / deepomics
  deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis
  ☆23Updated 2 years ago
• eiriniar / CellCnn
  Representation Learning for detection of phenotype-associated cell subsets
  ☆65Updated 4 years ago
• pachterlab / CBP_2021
  ☆16Updated 3 years ago
• berenslab / rna-seq-tsne
  The art of using t-SNE for single-cell transcriptomics
  ☆126Updated 7 months ago
• CellCognition / cecog
  A fast and cross-platform image analysis framework for fluorescence time-lapse microscopy and bioimage informatics.
  ☆44Updated last year
• samocooper / nuclitrack
  A python developed graphical user interface for tracking cell nuclei
  ☆9Updated 7 years ago
• mehta-lab / microDL
  3D virtual staining with 2D and 2.5D U-Nets
  ☆29Updated last year
• idekerlab / DCell
  DCell browser and gene deletion simulator
  ☆125Updated 2 years ago
• KrishnaswamyLab / SAUCIE
  ☆100Updated 9 months ago
• QData / DeepChrome
  Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications
  ☆63Updated 4 years ago
• ManchesterBioinference / BranchedGP
  Branching Gaussian process
  ☆30Updated 2 years ago
• scvae / scvae
  Deep learning for single-cell transcript counts
  ☆89Updated 4 months ago
• CellProfiler / CellProfiler-plugins
  Community-contributed and experimental CellProfiler modules.
  ☆67Updated last week
• greenelab / DAPS
  Denoising Autoencoders for Phenotype Stratification
  ☆41Updated 6 years ago
• QData / DeepMotif
  Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications
  ☆46Updated 6 years ago