AllenCellModeling / torch_integrated_cellLinks
☆46Updated 3 months ago
Alternatives and similar repositories for torch_integrated_cell
Users that are interested in torch_integrated_cell are comparing it to the libraries listed below
Sorting:
- This repository contains the code, and access to the pretrained models and datasets for the paper: "Automated analysis of high-content mi…☆50Updated 8 years ago
- Integrated Cell project implemented in pytorch☆44Updated 3 months ago
- This code contains the neural network implementation from the nature communication manuscript NCOMMS-16-25447A.☆33Updated 8 years ago
- a python module to download Broad Bioimage Benchmark Collection images☆24Updated 6 years ago
- Microscopy Image Cytometry Toolkit☆114Updated 3 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 7 years ago
- Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4…☆20Updated last month
- ☆51Updated 7 years ago
- CS273B Deep Learning for Genomics Course Materials☆34Updated 5 years ago
- Source code from Bray et al., (2017) A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Pa…☆44Updated 2 years ago
- A web application for classifying objects☆29Updated 4 years ago
- Representation Learning for detection of phenotype-associated cell subsets☆66Updated 5 years ago
- ☆16Updated 4 years ago
- ☆13Updated 6 years ago
- Software for processing and analyzing STARmap experiments.☆38Updated 6 years ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆22Updated 2 years ago
- ☆102Updated last year
- DCell browser and gene deletion simulator☆124Updated 3 years ago
- ☆11Updated 8 years ago
- Community-contributed and experimental CellProfiler modules.☆72Updated 3 weeks ago
- Code and Data to accompany "Dilated Convolutions for Modeling Long-Distance Genomic Dependencies", presented at the ICML 2017 Workshop on…☆29Updated 8 years ago
- Morphological profiling using deep learning☆123Updated last year
- Denoising Autoencoders for Phenotype Stratification☆42Updated 7 years ago
- Python utilities for building integrated views of TCGA data.☆32Updated 7 years ago
- ☆18Updated 8 years ago
- Repository for my research on generative modelling of cell images☆14Updated 3 years ago
- Wasserstein Generative Adversarial Network for analysing scRNAseq data☆34Updated 5 years ago
- Deep learning for single-cell transcript counts☆88Updated 10 months ago
- Image classification for imaging flow cytometry.☆28Updated last year
- Graph regularized nonnegative matrix factorization (GNMF) in Python☆46Updated 5 years ago