AllenCellModeling / torch_integrated_cell
☆45Updated 6 years ago
Alternatives and similar repositories for torch_integrated_cell:
Users that are interested in torch_integrated_cell are comparing it to the libraries listed below
- Integrated Cell project implemented in pytorch☆44Updated last year
- a python module to download Broad Bioimage Benchmark Collection images☆24Updated 5 years ago
- This repository contains the code, and access to the pretrained models and datasets for the paper: "Automated analysis of high-content mi…☆50Updated 7 years ago
- ☆49Updated 6 years ago
- This code contains the neural network implementation from the nature communication manuscript NCOMMS-16-25447A.☆31Updated 7 years ago
- Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4…☆20Updated 2 years ago
- A fast and cross-platform image analysis framework for fluorescence time-lapse microscopy and bioimage informatics.☆43Updated 8 months ago
- ☆18Updated 7 years ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Updated 3 years ago
- Microscopy Image Cytometry Toolkit☆116Updated 2 years ago
- A web application for classifying objects☆29Updated 3 years ago
- Software for processing and analyzing STARmap experiments.☆34Updated 5 years ago
- Python nd2 reader based on the ND2 SDK☆16Updated 3 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Source code from Bray et al., (2017) A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Pa…☆38Updated last year
- A python developed graphical user interface for tracking cell nuclei☆9Updated 7 years ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆23Updated 2 years ago
- Branching Gaussian process☆28Updated last year
- CS273B Deep Learning for Genomics Course Materials☆32Updated 4 years ago
- Repository for my research on generative modelling of cell images☆13Updated 2 years ago
- Deep convolutional neural networks for biological motion analysis☆14Updated 6 years ago
- 3D virtual staining with 2D and 2.5D U-Nets☆27Updated last year
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆28Updated last month
- ☆26Updated 5 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 6 years ago
- Analysis of results of the Data Science Bowl 2018☆21Updated 4 years ago
- Community-contributed and experimental CellProfiler modules.☆63Updated 2 weeks ago
- Manual, source-code and binaries for the NanoJ-Fluidics project☆50Updated 2 years ago
- TensorFlow Deconvolution for Microscopy Data☆90Updated 2 years ago
- This package can be used to read image data using BioFormats into numpy arrays. It was initially created to read CZI image files, but sho…☆12Updated 3 years ago