Alternatives and similar repositories for torch_integrated_cell:

Users that are interested in torch_integrated_cell are comparing it to the libraries listed below

• AllenCellModeling / pytorch_integrated_cell
  Integrated Cell project implemented in pytorch
  ☆44Updated last year
• psteinb / b3get
  a python module to download Broad Bioimage Benchmark Collection images
  ☆24Updated 6 years ago
• pachterlab / CBP_2021
  ☆16Updated 3 years ago
• theislab / deepflow
  This code contains the neural network implementation from the nature communication manuscript NCOMMS-16-25447A.
  ☆32Updated 7 years ago
• CovertLab / DeepCell
  ☆49Updated 6 years ago
• okraus / DeepLoc
  This repository contains the code, and access to the pretrained models and datasets for the paper: "Automated analysis of high-content mi…
  ☆50Updated 7 years ago
• CellCognition / cecog
  A fast and cross-platform image analysis framework for fluorescence time-lapse microscopy and bioimage informatics.
  ☆43Updated 10 months ago
• samocooper / nuclitrack
  A python developed graphical user interface for tracking cell nuclei
  ☆9Updated 7 years ago
• eiriniar / CellCnn
  Representation Learning for detection of phenotype-associated cell subsets
  ☆65Updated 4 years ago
• piximi / piximi_old
  a free, open-source web app for annotating, training, and evaluating image understanding algorithms
  ☆25Updated 3 years ago
• hammerlab / cytokit
  Microscopy Image Cytometry Toolkit
  ☆116Updated 2 years ago
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 4 years ago
• weallen / STARmap
  Software for processing and analyzing STARmap experiments.
  ☆36Updated 5 years ago
• sofroniewn / image-demos
  imaging demos
  ☆9Updated 2 years ago
• marrlab / HematoFatePrediction
  Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4…
  ☆20Updated 2 years ago
• mehta-lab / microDL
  3D virtual staining with 2D and 2.5D U-Nets
  ☆29Updated last year
• carpenterlab / 2019_caicedo_dsb
  Analysis of results of the Data Science Bowl 2018
  ☆21Updated 4 years ago
• DanuserLab / u-shape3D
  Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…
  ☆29Updated last week
• CellProfiler / CellProfiler-plugins
  Community-contributed and experimental CellProfiler modules.
  ☆63Updated this week
• PathologyDataScience / HistomicsML
  An interactive machine learning framework for large histopathology images.
  ☆20Updated last year
• AllenInstitute / aics-ml-segmentation
  AICS ML Segmentation (One-Way) Mirror
  ☆27Updated 3 years ago
• biocompibens / SME
  Smooth 2D manifold extraction from 3D image stack
  ☆21Updated 7 years ago
• gigascience / paper-bray2017
  Source code from Bray et al., (2017) A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Pa…
  ☆40Updated last year
• CellProfiler / notebooks
  Jupyter notebooks for CellProfiler and friends
  ☆13Updated 7 years ago
• IDR / idr-metadata
  Curated metadata for all studies published in the Image Data Resource
  ☆16Updated last week
• CamaraLab / CAJAL
  A Python package using Gromov-Wasserstein distance to compare cell shapes
  ☆17Updated 2 months ago
• shntnu / cytomining-hackathon-wiki
  CytoData 2016 – origin story
  ☆18Updated 7 years ago
• cytomining / DeepProfiler
  Morphological profiling using deep learning
  ☆115Updated 6 months ago
• carpenterlab / unet4nuclei
  U-net based segmentation of nuclei in microscopy images
  ☆52Updated 6 years ago
• piximi / application_archived
  A web application for classifying objects
  ☆29Updated 3 years ago