AllenCellModeling / torch_integrated_cellLinks
☆46Updated 6 years ago
Alternatives and similar repositories for torch_integrated_cell
Users that are interested in torch_integrated_cell are comparing it to the libraries listed below
Sorting:
- Integrated Cell project implemented in pytorch☆44Updated last year
- a python module to download Broad Bioimage Benchmark Collection images☆24Updated 6 years ago
- ☆49Updated 7 years ago
- This repository contains the code, and access to the pretrained models and datasets for the paper: "Automated analysis of high-content mi…☆50Updated 8 years ago
- This code contains the neural network implementation from the nature communication manuscript NCOMMS-16-25447A.☆33Updated 7 years ago
- Smooth 2D manifold extraction from 3D image stack☆21Updated 7 years ago
- PyKNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for high-throughput image annotation…☆18Updated 5 years ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Updated 3 years ago
- ☆16Updated 3 years ago
- A fast and cross-platform image analysis framework for fluorescence time-lapse microscopy and bioimage informatics.☆44Updated last year
- Microscopy Image Cytometry Toolkit☆116Updated 2 years ago
- Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4…☆20Updated 2 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆29Updated 2 months ago
- A python developed graphical user interface for tracking cell nuclei☆9Updated 7 years ago
- Image classification for imaging flow cytometry.☆29Updated 5 months ago
- Source code from Bray et al., (2017) A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Pa…☆41Updated last year
- U-net based segmentation of nuclei in microscopy images☆53Updated 6 years ago
- Documentations of BigNeuron Project progress☆24Updated 9 years ago
- ☆40Updated 5 years ago
- Data stories☆10Updated 7 years ago
- Branching Gaussian process☆30Updated 2 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 6 years ago
- 3D virtual staining with 2D and 2.5D U-Nets☆29Updated last year
- Software for processing and analyzing STARmap experiments.☆38Updated 5 years ago
- The art of using t-SNE for single-cell transcriptomics☆125Updated 6 months ago
- A web application for classifying objects☆29Updated 3 years ago
- ☆99Updated 8 months ago
- Community-contributed and experimental CellProfiler modules.☆66Updated last week
- Legacy project superseded by https://github.com/morphonets/SNT☆12Updated 3 years ago