Alternatives and similar repositories for torch_integrated_cell:

Users that are interested in torch_integrated_cell are comparing it to the libraries listed below

• AllenCellModeling / pytorch_integrated_cell
  Integrated Cell project implemented in pytorch
  ☆43Updated last year
• okraus / DeepLoc
  This repository contains the code, and access to the pretrained models and datasets for the paper: "Automated analysis of high-content mi…
  ☆50Updated 7 years ago
• psteinb / b3get
  a python module to download Broad Bioimage Benchmark Collection images
  ☆24Updated 5 years ago
• piximi / piximi_old
  a free, open-source web app for annotating, training, and evaluating image understanding algorithms
  ☆25Updated 3 years ago
• CellCognition / cecog
  A fast and cross-platform image analysis framework for fluorescence time-lapse microscopy and bioimage informatics.
  ☆43Updated 7 months ago
• theislab / deepflow
  This code contains the neural network implementation from the nature communication manuscript NCOMMS-16-25447A.
  ☆31Updated 6 years ago
• CovertLab / DeepCell
  ☆49Updated 6 years ago
• gigascience / paper-bray2017
  Source code from Bray et al., (2017) A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Pa…
  ☆36Updated last year
• marrlab / HematoFatePrediction
  Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4…
  ☆20Updated 2 years ago
• biocompibens / SME
  Smooth 2D manifold extraction from 3D image stack
  ☆21Updated 6 years ago
• hammerlab / cytokit
  Microscopy Image Cytometry Toolkit
  ☆116Updated 2 years ago
• jmschrei / rambutan
  Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.
  ☆21Updated 6 years ago
• harvardnlp / regulatory-prediction
  Code and Data to accompany "Dilated Convolutions for Modeling Long-Distance Genomic Dependencies", presented at the ICML 2017 Workshop on…
  ☆28Updated 7 years ago
• DanuserLab / u-shape3D
  Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…
  ☆28Updated this week
• carpenterlab / unet4nuclei
  U-net based segmentation of nuclei in microscopy images
  ☆52Updated 6 years ago
• jssong-lab / maxEnt
  ☆11Updated 7 years ago
• p-koo / deepomics
  deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis
  ☆23Updated last year
• piximi / application_archived
  A web application for classifying objects
  ☆29Updated 3 years ago
• KlugerLab / pyFIt-SNE
  Python Wrapper for FIt-SNE
  ☆45Updated 3 years ago
• pachterlab / CBP_2021
  ☆16Updated 3 years ago
• soft-matter / pims_nd2
  Python nd2 reader based on the ND2 SDK
  ☆16Updated 2 years ago
• gokceneraslan / biorxiv-sanity-preserver
  Web interface for browsing, search and filtering recent biorxiv submissions
  ☆14Updated 7 years ago
• tariqdaouda / FiberedAE
  Implementation of Fibered Auto-Encoders
  ☆9Updated 4 years ago
• cytomining / DeepProfiler
  Morphological profiling using deep learning
  ☆110Updated 2 months ago
• goldsborough / cytogan
  Repository for my research on generative modelling of cell images
  ☆13Updated 2 years ago
• aosokin / biogans
  Implementation of "GANs for Biological Image Synthesis"
  ☆95Updated 7 years ago
• KlugerLab / deepcytof
  ☆18Updated 7 years ago
• carpenterlab / 2019_caicedo_dsb
  Analysis of results of the Data Science Bowl 2018
  ☆21Updated 4 years ago
• fiji / SNT
  Legacy project superseded by https://github.com/morphonets/SNT
  ☆11Updated 3 years ago
• mehta-lab / microDL
  3D virtual staining with 2D and 2.5D U-Nets
  ☆27Updated last year