dariober / bioinformatics-cafeLinks
Unsorted scripts for bioinformatics
☆61Updated 4 years ago
Alternatives and similar repositories for bioinformatics-cafe
Users that are interested in bioinformatics-cafe are comparing it to the libraries listed below
Sorting:
- Tip and tricks for BAM files☆86Updated 7 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- A pipeline for differential expression and differential alternative splicing analysis☆66Updated last year
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆84Updated 4 years ago
- ☆50Updated 4 years ago
- ☆72Updated 2 years ago
- Tools for analyzing DNA methylation data☆44Updated this week
- A toolset for profiling alternative splicing events in RNA-Seq data.☆84Updated 11 months ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆121Updated last month
- A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…☆49Updated 2 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- Relevant papers for CNV and SV approaches☆94Updated last year
- csf fork of fastqc for usage on selected reads of unaligned bam file☆48Updated 12 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆58Updated 10 months ago
- An R interface to the MEME Suite☆54Updated last week
- Analysis pipeline for the GUIDE-seq assay.☆81Updated 2 years ago
- A tool for bigWig files.☆118Updated 7 years ago
- A list of alternative splicing analysis resources☆46Updated 9 months ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 11 months ago
- Genomic Interactive Visualization Engine☆146Updated 3 years ago
- Command-line tool for the visualization of splicing events across multiple samples☆136Updated last year
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- Precision HLA typing from next-generation sequencing data☆76Updated last week
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- FEELnc : FlExible Extraction of LncRNA☆93Updated 5 months ago
- HMMRATAC peak caller for ATAC-seq data☆98Updated last year
- Publication quality NGS track plotting☆117Updated 3 months ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated last week
- piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School☆61Updated 6 months ago