Code for learnable topological features for phylogenetic inference via graph neural networks
☆11Mar 3, 2023Updated 3 years ago
Alternatives and similar repositories for vbpi-gnn
Users that are interested in vbpi-gnn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Developing efficient Bayesian phylogenetic inference methods☆12Dec 21, 2019Updated 6 years ago
- A multi-algorithmic framework for phylogenetic inference☆14Aug 25, 2026Updated 3 weeks ago
- Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees☆12Sep 6, 2023Updated 3 years ago
- Phylogenetic inference using Stan☆24Mar 6, 2025Updated last year
- ☆13Aug 4, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Python-interface C++ library for Bayesian phylogenetics via optimization☆41Apr 8, 2024Updated 2 years ago
- A probabilistic framework in PyTorch for phylogenetic models☆20Apr 24, 2026Updated 4 months ago
- The official codebase for Reflected Flow Matching (ICML 2024)☆24Jun 19, 2024Updated 2 years ago
- phylo2vec: a library for vector-based phylogenetic tree manipulation☆21Sep 1, 2026Updated 2 weeks ago
- Fast Neighbor-Joining and other distance-based methods for phylogenetics☆17Jun 21, 2024Updated 2 years ago
- Fast and accurate Phylogeny estimation with self-attention Networks☆43Apr 19, 2025Updated last year
- Prediction of horizontal gene transfer (HGT) using graph convolutional network☆13Apr 25, 2022Updated 4 years ago
- Scripts for building computational models of gene regulation with tensorflow☆12Jan 21, 2020Updated 6 years ago
- Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences☆10Feb 26, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Bio++ Program Suite☆18Jul 10, 2026Updated 2 months ago
- CellCoal: coalescent simulation of single-cell NGS genotypes☆15Feb 10, 2025Updated last year
- Sequential Tree Sampler for online phylogenetics☆16Mar 19, 2019Updated 7 years ago
- 爬取得到APP课程数据☆12Oct 27, 2019Updated 6 years ago
- ☆12Mar 12, 2026Updated 6 months ago
- ☆14Jan 5, 2022Updated 4 years ago
- Implementation of the paper "Neural Wasserstein Gradient Flows for Discrepancies with Riesz Kernels"☆11Mar 18, 2024Updated 2 years ago
- Bayesian Framework for Updating☆13Mar 31, 2023Updated 3 years ago
- A tool for finite element model (FEM) visualization and post-processing for OpenSees. To cite this Original Software Publication: https:/…☆17Jul 7, 2021Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Object-oriented MATLAB toolbox for structural health monitoring☆18Jun 18, 2019Updated 7 years ago
- Analysis tools for PhIP-seq experiments☆13Jan 24, 2022Updated 4 years ago
- This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"☆16Jun 7, 2023Updated 3 years ago
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Sep 18, 2024Updated 2 years ago
- A forward-time simulator for gene sequences modeling a variety of mutation and selection processes.☆22Aug 23, 2023Updated 3 years ago
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆13Feb 7, 2025Updated last year
- A package for making MuE observation models in Edward2.☆13Jun 10, 2021Updated 5 years ago
- Vehicle-Bridge Interaction model in 2 dimensions (VBI-2D) for Matlab☆17Feb 3, 2026Updated 7 months ago
- Deep Learning for Structural Health monitoring☆23Sep 27, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Code repository for a shear frame with Bouc-Wen hysteretic links as a multi-degree of freedom nonlinear response simulator☆17May 27, 2026Updated 3 months ago
- All tutorials of lightoj online judge that are found, added in this repositories .☆12Jan 29, 2021Updated 5 years ago
- A remake of the classic DX-Ball built with OpenGL and SDL2☆10Jun 27, 2023Updated 3 years ago
- MicroPheno Project☆12Oct 21, 2022Updated 3 years ago
- Bayesian enrichment estimation in R☆11Nov 15, 2025Updated 10 months ago
- Official PyTorch implementation for "Unifying Bayesian Flow Networks and Diffusion Models through Stochastic Differential Equations"☆41Apr 23, 2024Updated 2 years ago
- Repository to tutorials on the implementation of the Transitional Ensemble Markov Chain Monte Carlo (TEMCMC) sampler for Bayesian Model U…☆22Aug 2, 2026Updated last month