Alternatives and similar repositories for PhyloInfer:

Users that are interested in PhyloInfer are comparing it to the libraries listed below

• zcrabbit / sbn
  Generalizing Phylogenetic Posterior Estimator from MCMC samples via subplit Bayesian networks
  ☆9Updated 5 years ago
• rgiordan / vittles
  "Variational inference tools to leverage estimator sensitivity."
  ☆16Updated last year
• phylovi / bito
  Python-interface C++ library for Bayesian phylogenetics via optimization
  ☆38Updated 11 months ago
• andrewcharlesjones / multi-group-GP
  Multi-group Gaussian process (MGGP)
  ☆19Updated 7 months ago
• msesia / deepknockoffs
  Approximate knockoffs and model-free variable selection.
  ☆52Updated 3 years ago
• skdeshpande91 / VCBART
  R implementation of VCBART
  ☆20Updated 9 months ago
• 4ment / torchtree
  A probabilistic framework in PyTorch for phylogenetic models
  ☆15Updated 3 months ago
• mims-harvard / fusenet
  Network inference by fusing data from diverse distributions
  ☆14Updated 8 years ago
• pcarbo / varbvs
  Large-scale Bayesian variable selection for R and MATLAB.
  ☆41Updated last year
• jsilve24 / stray
  Stray has been renamed fido, development continues at jsilve24/fido
  ☆23Updated 3 years ago
• jan-glx / ICPy
  This packages provides a simple python implementation of Invariant Causal Prediction (ICP)
  ☆13Updated 11 months ago
• christiaanjs / treeflow
  ☆13Updated 4 months ago
• HaohanWang / thePrecisionLasso
  implementation for Precision Lasso: accounting for correlations and linear dependencies in high-dimensional genomic data
  ☆13Updated 4 years ago
• Leo-Simpson / c-lasso
  c-lasso: a Python package for constrained sparse regression and classification
  ☆32Updated 3 years ago
• aterenin / SparseGPAX
  An ultra-lightweight JAX implementation of sparse Gaussian processes via pathwise sampling.
  ☆22Updated 3 years ago
• OATML / ucate
  Uncertainty in Conditional Average Treatment Effect Estimation
  ☆29Updated 3 years ago
• duvenaud / additive-gps
  Source for experiments in the Additive Gaussian process paper, as well as extensions relating to dropout.
  ☆21Updated 11 years ago
• rsnirwan / HouseholderBPCA
  Rotation Invariant Householder Parameterization for Bayesian PCA
  ☆17Updated 2 years ago
• STOR-i / sgmcmc
  sgmcmc: a stochastic gradient MCMC package for R
  ☆29Updated 4 years ago
• ciemss / pyciemss
  Causal and probabilistic reasoning with continuous time dynamical systems
  ☆17Updated last week
• mgorinova / autoreparam
  Automatic Reparameterisation of Probabilistic Programs
  ☆36Updated 4 years ago
• 4ment / phylostan
  Phylogenetic inference using Stan
  ☆24Updated last week
• jbloomlab / SARS2-RBD-escape-calc
  SARS-CoV-2 RBD antibody escape calculator
  ☆11Updated 3 months ago
• Teichlab / RCA
  Residual Component Analysis
  ☆10Updated 7 years ago
• cbg-ethz / SGS
  Inference in Bayesian Networks with R
  ☆11Updated 2 years ago
• MateusMaiaDS / gpbart
  Implementation of GP-BART algorithm.
  ☆16Updated last year
• tansey / hrt
  The holdout randomization test: feature selection using black box predictive models
  ☆22Updated 3 years ago
• PierreBoyeau / decision-making-vaes
  ☆19Updated 3 years ago
• rpatrik96 / nl-causal-representations
  This is the code for the paper Jacobian-based Causal Discovery with Nonlinear ICA, demonstrating how identifiable representations (partic…
  ☆17Updated 6 months ago
• BasisResearch / millipede
  A library for bayesian variable selection
  ☆28Updated last month