mgbckr / corals-lib-python
☆12Updated 7 months ago
Alternatives and similar repositories for corals-lib-python:
Users that are interested in corals-lib-python are comparing it to the libraries listed below
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆22Updated this week
- ☆31Updated 6 months ago
- Fast, sensitive and accurate protein remote homology search on GPUs☆15Updated 9 months ago
- A comprehensive R package for label-free proteomics data analysis and modeling☆14Updated last year
- Genomic sequence preprocessing toolkit☆11Updated last month
- Comparison of Adaptive Immune Receptor Repertoires☆26Updated last month
- Examples for gget (https://github.com/pachterlab/gget).☆32Updated last month
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆11Updated last year
- BioInformatics Agent (BIA): Unleashing the Power of Large Language Models to Reshape Bioinformatics Workflow☆25Updated 6 months ago
- ☆14Updated 8 years ago
- AlphaFold-based prediction of pathogenicity for any missense variant.☆18Updated 3 weeks ago
- Map genetic variants and protein positions to protein interfaces in 3D☆13Updated last year
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆43Updated this week
- Useful functions for manipulating Multiplex Assay of Variant Effect datasets.☆10Updated 3 weeks ago
- Universal RObust Peak Annotator☆15Updated last year
- ☆10Updated 3 years ago
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆14Updated last year
- Bayesian analysis of MPRA and other high-throughput genomic assays☆10Updated 4 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- a guideRNA database generation tool☆15Updated 2 months ago
- ☆19Updated 2 months ago
- ☆19Updated last year
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆29Updated 2 weeks ago
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆20Updated 9 months ago
- A GenePattern module for running the ssGSEA method☆13Updated 2 years ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 3 years ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆13Updated 2 years ago
- Summary statistics for repertoires☆16Updated 2 years ago
- Interpretable splicing model☆20Updated last year
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14Updated 9 months ago