qczhang / icSHAPELinks
icSHAPE pipeline
☆30Updated 9 years ago
Alternatives and similar repositories for icSHAPE
Users that are interested in icSHAPE are comparing it to the libraries listed below
Sorting:
- ☆21Updated 5 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆82Updated last month
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆37Updated 4 months ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆31Updated 3 years ago
- HiC uniform processing pipeline☆60Updated last year
- Public repository for ShapeMapper 2 releases☆37Updated 6 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 4 months ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- ☆58Updated 3 years ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆50Updated 7 years ago
- Demultiplexes a fastq.☆44Updated 4 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆86Updated 2 years ago
- Lightweight converter between hic and cool contact matrices.☆73Updated 11 months ago
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆61Updated 6 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆109Updated 2 months ago
- A list of alternative splicing analysis resources☆44Updated 3 months ago
- Allele-specific alignment sorting☆58Updated 2 years ago
- Analysis pipeline for the GUIDE-seq assay.☆78Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- ☆48Updated 3 years ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 5 months ago
- A tool for bigWig files.☆119Updated 7 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆46Updated 2 years ago
- New version of JACUSA -> 2.0☆27Updated last month
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆76Updated 3 years ago
- Genome-wide assessment of differential translations with ribosome profiling data☆19Updated last month
- RNA-seq data analysis practical☆61Updated 10 years ago
- ☆43Updated 2 years ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆114Updated last year