qczhang / icSHAPELinks
icSHAPE pipeline
☆30Updated 9 years ago
Alternatives and similar repositories for icSHAPE
Users that are interested in icSHAPE are comparing it to the libraries listed below
Sorting:
- Public repository for ShapeMapper 2 releases☆37Updated 7 months ago
- circular RNA analysis toolset☆84Updated 10 months ago
- Analysis pipeline for the GUIDE-seq assay.☆78Updated 2 years ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆131Updated 3 weeks ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆86Updated 2 years ago
- A tool for bigWig files.☆119Updated 7 years ago
- ☆146Updated 2 months ago
- Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files☆111Updated 3 years ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆114Updated last year
- ☆58Updated last week
- REDItools are python scripts to investigate RNA editing at genomic scale.☆67Updated last week
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆84Updated 2 months ago
- MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation☆137Updated 2 years ago
- HiC uniform processing pipeline☆60Updated last year
- A (mostly) universal methylation extractor for BS-seq experiments.☆173Updated last year
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆120Updated last year
- xHLA: Fast and accurate HLA typing from short read sequence data☆112Updated last year
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 5 months ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆111Updated 10 months ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆31Updated 3 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆149Updated last year
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆130Updated 11 months ago
- ☆57Updated 5 years ago
- Fast alignment and preprocessing of chromatin profiles☆203Updated this week
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆61Updated 6 years ago
- Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA☆73Updated 5 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆109Updated 4 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆110Updated 3 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆78Updated 3 years ago