Alternatives and similar repositories for snakemake-with-R

Users that are interested in snakemake-with-R are comparing it to the libraries listed below

• psoerensen / qgg
  Statistical tools for Quantitative Genetic Analyses
  ☆38Updated last week
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆52Updated 11 months ago
• kevinblighe / CorLevelPlot
  Visualise correlation results and test significancies of these
  ☆25Updated 6 years ago
• PejLab / Pantry
  Pan-transcriptomic phenotyping
  ☆18Updated 3 months ago
• GangLiLab / genekitr
  🧬 Gene analysis toolkit based on R
  ☆61Updated last year
• xinhe-lab / ctwas
  causal TWAS (cTWAS)
  ☆47Updated 2 weeks ago
• waldronlab / MultiAssayWorkshop
  Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment
  ☆24Updated 7 months ago
• statOmics / satuRn
  satuRn is a highly performant and scalable method for performing differential transcript usage analyses.
  ☆23Updated 2 years ago
• dunnlab / cellphylo
  ☆14Updated last year
• rnabioco / scraps
  Single Cell RNA PolyA Site Discovery
  ☆11Updated last week
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆27Updated 3 months ago
• Core-Bioinformatics / bulkAnalyseR
  ☆29Updated 2 years ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆71Updated last week
• xihaoli / STAAR
  An R package for performing STAAR procedure in whole-genome sequencing studies
  ☆97Updated 11 months ago
• ramiromagno / gwasrapidd
  gwasrapidd: an R package to query, download and wrangle GWAS Catalog data
  ☆100Updated 8 months ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆62Updated last year
• sa-lee / superintronic
  A tidy interface for coverage analysis
  ☆31Updated 5 years ago
• rnabioco / djvdj
  An R package to analyze single-cell V(D)J data
  ☆28Updated 2 years ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated 7 months ago
• Novartis / easyTrackHubs
  This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…
  ☆28Updated last year
• adhikari-statgen-lab / fastman
  An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.
  ☆39Updated 4 months ago
• CompEpigen / methrix
  An R for fast and flexible DNA methylation analysis
  ☆35Updated last month
• shenlab-sinai / GeneOverlap
  R package for testing and visualizing gene list overlaps
  ☆19Updated 9 years ago
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 3 years ago
• NBISweden / workshop-epigenomics-RTDs
  workshop website on readthedocs
  ☆21Updated 4 months ago
• fauman / EGEA
  Every Gene Ever Annotated in published GWAS
  ☆51Updated 3 years ago
• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆69Updated last week
• Evotec-Bioinformatics / evoGO
  Gene Ontology (GO) enrichment analysis
  ☆11Updated 2 years ago
• andreyshabalin / MatrixEQTL
  Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
  ☆90Updated 2 years ago
• joepickrell / fgwas
  Functional genomics and genome-wide association studies
  ☆69Updated 7 years ago