interactive analysis of calcium imaging data from larval zebrafish
☆136Jun 6, 2019Updated 7 years ago
Alternatives and similar repositories for FishExplorer
Users that are interested in FishExplorer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Z-Brain Viewer and Analysis Scripts for MAP-Mapping☆27Apr 11, 2025Updated last year
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆33Sep 14, 2023Updated 3 years ago
- Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…☆18Updated this week
- Routines for teaching MRI principles in Stanford's Psych 204A☆14Aug 6, 2026Updated last month
- Analysis code for the results of the spikefinder challenge☆12Feb 19, 2018Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- LaTex code for creating my CV☆11Jul 5, 2019Updated 7 years ago
- Matlab interface for Latent Factor Analysis via Dynamical Systems (LFADS)☆52Dec 17, 2021Updated 4 years ago
- This code package is for the Corrected-Fisher-Randomization (CFR) method. This method generates random surrogate data that preserves a sp…☆10Sep 9, 2017Updated 9 years ago
- Urai AE, de Gee JW, Tsetsos K, Donner TH (2019) Choice history biases subsequent evidence accumulation. eLife☆16Jul 20, 2020Updated 6 years ago
- Tools for processing 2P recordings☆132Oct 9, 2023Updated 2 years ago
- A modular package to control stimulation and track behaviour☆50Nov 8, 2024Updated last year
- mathematical methods for neuroscience and machine learning☆24Jul 30, 2019Updated 7 years ago
- A framework for conducting realtime neurophysiology and psychophysics experiments☆20Updated this week
- NeurIPS 2018. Linear-time model comparison tests.☆17Feb 15, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code from the paper "Joint rotational invariance and adversarial training of a dual-stream Transformer yields state of the art Brain-Scor…☆16May 15, 2022Updated 4 years ago
- Recordings of 10k neurons during spontaneous behaviors☆55Aug 12, 2026Updated last month
- a repository containing everything relevant to our fast non-negative deconvolution work☆35Nov 28, 2016Updated 9 years ago
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆737Aug 2, 2026Updated last month
- This code package is for the Tensor-Maximum-Entropy (TME) method. This method generates random surrogate data that preserves a specified …☆18Sep 9, 2017Updated 9 years ago
- ☆45Aug 6, 2025Updated last year
- CNN Neural System Identification Model☆31Feb 7, 2018Updated 8 years ago
- Neuroproc dataset descriptions and dictionaries☆17Jan 2, 2017Updated 9 years ago
- GPU code for spike sorting☆188Feb 19, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Exercises for 2015 Berkeley practical neuroimaging class☆27Nov 17, 2015Updated 10 years ago
- Matlab function to create schemaball plots☆14Jan 15, 2017Updated 9 years ago
- Pipeline used internally for Peter Bubenik's TDA Group at UF.☆11Nov 3, 2022Updated 3 years ago
- Towards Nonlinear Disentanglement in Natural Data with Temporal Sparse Coding☆74Nov 17, 2021Updated 4 years ago
- ☆12Nov 3, 2021Updated 4 years ago
- Linear-Nonlinear-Poisson (LNP) model fitting via Maximally-Informative-Dimensions (MID) / maximum likelihood☆20Nov 26, 2017Updated 8 years ago
- Work towards creating a common JSON based format for compact network specification☆14Aug 17, 2026Updated last month
- Package for fitting/optimization of NeuroML models☆18Jul 21, 2026Updated last month
- Notebooks for the Berkeley course on practical neuroimaging☆17Jul 31, 2015Updated 11 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A demo and tutorial for how to use git and singularity to make your research more portable and reproducible☆26Oct 13, 2016Updated 9 years ago
- Causal inference in non-linear dynamics systems☆16Jun 20, 2017Updated 9 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆63Nov 26, 2023Updated 2 years ago
- A powerful white-box adversarial attack that exploits knowledge about the geometry of neural networks to find minimal adversarial perturb…☆12Aug 5, 2020Updated 6 years ago
- We created a model to remove physiological noise in fast fMRI without external reference signals.☆13Oct 21, 2019Updated 6 years ago
- Understanding computation in artificial and biological recurrent networks through the lens of dynamical systems.☆393May 28, 2021Updated 5 years ago
- Python package for analysis of dynamic fluorescence microscopy data☆106Mar 14, 2019Updated 7 years ago