Alternatives and similar repositories for DR_benchmark:

Users that are interested in DR_benchmark are comparing it to the libraries listed below

• canzarlab / JVis-learn
  ☆20Updated 3 years ago
• Vivianstats / scDesign
  A statistical simulator for rational scRNA-seq experimental design
  ☆11Updated 4 years ago
• SydneyBioX / SimBench
  ☆15Updated last year
• omiq-ai / Multicore-opt-SNE
  Parallel opt-SNE implementation with Python wrapper
  ☆37Updated 2 years ago
• const-ae / transformGamPoi-Paper
  ☆26Updated last year
• KChen-lab / SCMER
  Marker Selection by matching manifolds and elastic net
  ☆23Updated 5 months ago
• khodosevichlab / CellAnnotatoR
  Automated marker-based annotation of cell types
  ☆13Updated 2 years ago
• raphael-group / netNMF-sc
  netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data
  ☆22Updated 3 years ago
• Nanostring-Biostats / SpatialOmicsOverlay
  Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).
  ☆18Updated 3 months ago
• andrewcharlesjones / cplvm
  Contrastive Poisson latent variable models (CPLVMs)
  ☆11Updated 3 years ago
• klarman-cell-observatory / Perturb-CITE-seq
  ☆15Updated 2 years ago
• FridleyLab / spatialGE
  Methods for visualization and analysis of spatially-resolved gene expression
  ☆17Updated last week
• yanailab / enhance
  ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)
  ☆13Updated 5 years ago
• HelenaLC / simulation-comparison
  Snakemake workflow to benchmark scRNA-seq data simulators
  ☆13Updated 2 years ago
• chenlingantelope / HarmonizationSCANVI
  Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper
  ☆13Updated 2 years ago
• Teichlab / MultiMAP
  MultiMAP for integration of single cell multi-omics
  ☆55Updated last year
• shahcompbio / spectrum-tme
  Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"
  ☆22Updated last month
• cantinilab / OT-scOmics
  This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…
  ☆38Updated 2 years ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 3 years ago
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆57Updated last year
• yycunc / SAMEclustering
  SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data
  ☆14Updated 3 years ago
• duct317 / scDHA
  A tool for single-cell data analysis.
  ☆40Updated 11 months ago
• MarioniLab / oor_benchmark
  A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data
  ☆13Updated 5 months ago
• andreaskapou / scMET
  Bayesian modelling of DNA methylation heterogeneity at single-cell resolution
  ☆20Updated last year
• rongstat / SMAI
  Alignability testing and integration of single-cell data
  ☆21Updated last year
• SydneyBioX / CiteFuse
  CiteFuse:
  ☆27Updated 2 years ago
• architverma1 / tGPLVM
  tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data
  ☆17Updated 5 years ago
• KenLauLab / DR-structure-preservation
  A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques
  ☆15Updated 3 years ago
• kharchenkolab / vrnmf
  Volume-regularized NMF
  ☆17Updated 2 years ago
• cantinilab / momix-notebook
  ☆65Updated last year