ebecht / DR_benchmark
☆13Updated 3 years ago
Alternatives and similar repositories for DR_benchmark:
Users that are interested in DR_benchmark are comparing it to the libraries listed below
- ☆20Updated 3 years ago
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆14Updated 3 years ago
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆17Updated 5 years ago
- A statistical simulator for rational scRNA-seq experimental design☆11Updated 4 years ago
- ☆18Updated 2 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated 3 months ago
- Contrastive Poisson latent variable models (CPLVMs)☆11Updated 3 years ago
- ☆20Updated last year
- Parallel opt-SNE implementation with Python wrapper☆37Updated 2 years ago
- Automated marker-based annotation of cell types☆13Updated 2 years ago
- Deep learning in genomics☆18Updated 6 years ago
- GPU implementation of ARD NMF☆41Updated last year
- ☆15Updated 11 months ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆13Updated 5 years ago
- ☆15Updated 2 years ago
- Volume-regularized NMF☆17Updated 2 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- Analysis notebooks for the Covid-19 meta analysis that accompanies the Nature Medicine publication "Single-cell meta-analysis of SARS-CoV…☆24Updated 4 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆13Updated 3 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 3 years ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆39Updated 3 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆16Updated 2 years ago
- ☆16Updated 3 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- Code for preparing and running the imageCCA method.☆20Updated 7 years ago
- Bayesian modelling of DNA methylation heterogeneity at single-cell resolution☆20Updated last year
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Updated 2 years ago
- A Julia package for extracting mutation signatures using topic models☆18Updated 2 years ago
- Bayesian model selection to detect zero-inflated genes☆8Updated 4 years ago
- ☆30Updated 3 years ago