divyanshu-talwar / AutoImpute
AutoImpute : Autoencoder based imputation of single cell RNA-seq data
☆28Updated 4 years ago
Alternatives and similar repositories for AutoImpute:
Users that are interested in AutoImpute are comparing it to the libraries listed below
- generalized principal component analysis (GLM-PCA) implemented in python☆59Updated 4 years ago
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆17Updated 3 years ago
- Contrastive Poisson latent variable models (CPLVMs)☆11Updated 3 years ago
- ☆20Updated 3 years ago
- Python framework for single-cell RNA-seq clustering with special focus on transfer learning.☆18Updated 5 years ago
- ☆16Updated 2 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- An accurate and efficient deep learning method for single-cell RNA-seq data imputation☆87Updated 3 years ago
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆14Updated 3 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 2 years ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆39Updated 3 years ago
- ☆14Updated 2 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated 4 months ago
- ☆19Updated 3 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Bootstrap imputation for scRNAseq data☆12Updated 4 years ago
- MultiMAP for integration of single cell multi-omics☆55Updated last year
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆23Updated 2 years ago
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆51Updated 6 years ago
- This repository contains the tensorflow implementation of "GNE: A deep learning framework for gene network inference by aggregating biolo…☆31Updated 4 years ago
- Tools for building and manipulating graphs in Python☆41Updated 2 years ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆24Updated last year
- Conditional out-of-distribution prediction☆56Updated 7 months ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆53Updated 2 years ago
- ☆13Updated 2 years ago
- nimfa - A Python Library for Nonnegative Matrix Factorization Techniques☆10Updated 6 years ago
- scRNAseq integration with triplet neural networks☆40Updated 2 years ago
- Single-cell Hierarchical Poisson Factorization☆68Updated 2 years ago
- ☆31Updated 5 years ago
- ☆98Updated 5 months ago