AutoImpute : Autoencoder based imputation of single cell RNA-seq data
☆28Aug 17, 2020Updated 5 years ago
Alternatives and similar repositories for AutoImpute
Users that are interested in AutoImpute are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆19Mar 27, 2021Updated 5 years ago
- An accurate and efficient deep learning method for single-cell RNA-seq data imputation☆89Jan 31, 2022Updated 4 years ago
- Visualize cancer genomes with FAIR single-cell RNA-seq data☆13Jan 5, 2023Updated 3 years ago
- Python framework for single-cell RNA-seq clustering with special focus on transfer learning.☆18Aug 29, 2019Updated 6 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Jun 5, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A Unified RNA Sequencing Model (URSM) for joint analysis of single cell and bulk RNA-seq data.☆11Oct 20, 2017Updated 8 years ago
- ☆19Dec 1, 2021Updated 4 years ago
- Architectural stripe detection from 3D genome conformation data☆18Sep 15, 2025Updated 7 months ago
- Genome free discovery and classification of miRNAs from small RNA-Seq with random forests☆11Jun 12, 2018Updated 7 years ago
- LEGACY: Git commands to keep a Git repository and Bioconductor SVN in sync☆10Oct 17, 2016Updated 9 years ago
- Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits☆11Jun 2, 2021Updated 4 years ago
- ☆17Sep 20, 2020Updated 5 years ago
- DeepProfile framework, which learns a variational autoencoder (VAE) network from a vast quantity of publicly available gene expression sa…☆19Jun 7, 2018Updated 7 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Jul 19, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.☆43Mar 3, 2017Updated 9 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Dec 1, 2025Updated 4 months ago
- single nuclei RNA-seq analysis toolbox☆10Oct 26, 2016Updated 9 years ago
- ☆11Aug 14, 2020Updated 5 years ago
- ☆12Mar 30, 2021Updated 5 years ago
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆379Oct 3, 2024Updated last year
- repository containing analysis scripts and auxiliary files☆38Apr 9, 2020Updated 6 years ago
- AI application that can classify medical text according to the category of the ailment being described.☆12Apr 7, 2021Updated 5 years ago
- Use cases for anndata.☆14Jun 11, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Convolutional Embedded Networks for Population Scale Clustering and Bio-ancestry Inferencing☆11Jan 7, 2020Updated 6 years ago
- Deep soft K-means clustering with self-training for single cell RNA sequence data☆30Jul 20, 2020Updated 5 years ago
- Deep count autoencoder for denoising scRNA-seq data☆271Mar 21, 2024Updated 2 years ago
- ☆26Apr 3, 2019Updated 7 years ago
- ☆26Feb 15, 2018Updated 8 years ago
- Helper script for bioconductor/bioconductor_docker☆13Mar 13, 2026Updated last month
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- repository of scripts for comparative transcriptome analysis☆19Apr 10, 2019Updated 7 years ago
- large scale variational Gaussian state-space models☆15Feb 16, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Normalization for single cell RNA-seq data☆10Aug 25, 2022Updated 3 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Oct 5, 2015Updated 10 years ago
- The companion repository to Computational Modeling of Infectious Disease by Chris von Csefalvay☆11Dec 15, 2022Updated 3 years ago
- Collection of public scRNA-Seq datasets used by our group☆172May 4, 2021Updated 4 years ago
- ☆13Mar 20, 2021Updated 5 years ago
- 🌐 R package: Identify Global Objects in R Expressions☆29Apr 7, 2026Updated last week
- An Easy to Use Analysis System for All Human Public bulk RNAseq Data!☆19Dec 8, 2022Updated 3 years ago