jtaghiyar / kronosView external linksLinks
A workflow assembler for cancer genome analytics and informatics
☆19Nov 16, 2016Updated 9 years ago
Alternatives and similar repositories for kronos
Users that are interested in kronos are comparing it to the libraries listed below
Sorting:
- GenoTypes Compressor☆16May 19, 2022Updated 3 years ago
- ☆15Mar 7, 2016Updated 9 years ago
- The gkno launcher for executing tools or pipelines☆31Jan 17, 2017Updated 9 years ago
- ☆43Apr 20, 2016Updated 9 years ago
- Toil workflows for common genomic pipelines☆33Oct 3, 2019Updated 6 years ago
- ☆36Aug 13, 2020Updated 5 years ago
- normalize, left-align, trim, validate and clean VCF files☆20Jul 22, 2015Updated 10 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Jan 19, 2021Updated 5 years ago
- Assemble the Genome in a Bottle sequencing data☆10Aug 4, 2017Updated 8 years ago
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 10 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Apr 19, 2022Updated 3 years ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Jul 7, 2017Updated 8 years ago
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 8 years ago
- Deprecated, see https://labsyspharm.github.io/rnaseq/☆12Feb 28, 2019Updated 6 years ago
- Parallel Recipes : parallel workflow execution made easy☆13Sep 1, 2015Updated 10 years ago
- ☆12Feb 19, 2017Updated 8 years ago
- variant integration methods for the 1000 Genomes Project☆21Jan 16, 2018Updated 8 years ago
- An extensible Ruby on Rails web-service application and database for visualising HTGS data☆18Mar 7, 2014Updated 11 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 8 years ago
- Population-scale detection of novel sequence insertions☆27Aug 16, 2022Updated 3 years ago
- extract SV signal from a BAM☆11Jul 26, 2018Updated 7 years ago
- ☆12Dec 8, 2021Updated 4 years ago
- vcf file manipulation☆22Jul 9, 2015Updated 10 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated last year
- Curated collection of open-source bioinformatics tools☆28Feb 5, 2019Updated 7 years ago
- A novel pipeline framework to accelerate bioinformatics analysis☆30Oct 5, 2025Updated 4 months ago
- PopSTR - A Population based microsatellite genotyper☆32Oct 23, 2023Updated 2 years ago
- An algorithm for clonal tree reconstruction from multi-sample cancer sequencing data☆14Apr 1, 2018Updated 7 years ago
- ☆13Jun 21, 2017Updated 8 years ago
- RNA-Skim: a rapid method for RNA-Seq quantification at transcript level☆19Sep 3, 2017Updated 8 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Sep 12, 2018Updated 7 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- NuDup -- Marks/removes duplicate molecules based on the molecular tagging technology used in Tecan products.☆14Nov 19, 2019Updated 6 years ago
- robust matching of small variant datasets using flexible scoring schemes☆11Mar 26, 2020Updated 5 years ago
- BigWig manpulation tools using libBigWig and htslib☆30Aug 8, 2024Updated last year
- The SnoVault general purpose hybrid object-relational database☆16Mar 7, 2024Updated last year
- picking up low allelic-fraction, somatic variants from tumor samples☆14Jan 4, 2018Updated 8 years ago
- Simple matching of HTS samples based on HLA typing☆13Jan 4, 2017Updated 9 years ago
- Decentralized distributed database of genomic and clinical data.☆40Aug 3, 2018Updated 7 years ago