jtaghiyar / kronos
A workflow assembler for cancer genome analytics and informatics
☆19Updated 8 years ago
Alternatives and similar repositories for kronos:
Users that are interested in kronos are comparing it to the libraries listed below
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated 2 months ago
- What's The Function of these genes?☆22Updated 7 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 5 years ago
- ☆9Updated 8 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Population Reference Graphs for the HLA and MHC.☆34Updated 6 years ago
- ☆37Updated 4 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- SV☆14Updated 6 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 2 years ago
- ☆16Updated 8 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- ☆21Updated 3 weeks ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 3 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 8 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- A python script used to annotate genomic intervals.☆18Updated 4 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- Infrastructure code to support DNA pipeline☆38Updated 9 years ago
- An algorithm for clonal tree reconstruction from multi-sample cancer sequencing data☆14Updated 6 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 5 years ago
- Detection of structural variants in cancer mate-pair and paired-end data☆12Updated 5 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago