dmlond / docker_bwa_aligner

Related projects: ⓘ

• blachlylab / mucor
  ☆12Updated 7 years ago
• bmeg / funnel-client
  Trigger the Google Genomics Pipeline API with CWL
  ☆11Updated 7 years ago
• FredHutch / map_viruses
  Align short reads against viral genomes in protein space
  ☆9Updated 6 years ago
• bede / tictax
  Streaming sequence classification with web services ✓📌
  ☆19Updated last year
• StanfordBioinformatics / loom
  A tool for running bioinformatics workflows locally or in the cloud.
  ☆29Updated 4 years ago
• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated last year
• BD2KGenomics / cgcloud
  Image and VM management for Jenkins, Spark and Mesos clusters in EC2
  ☆22Updated 4 years ago
• mfiers / Moa
  Lightweight workflows in bioinformatics:
  ☆23Updated 9 years ago
• maasha / BioDSL
  BioDSL (pronounced Biodiesel) is a Domain Specific Language for creating bioinformatic analysis workflows.
  ☆16Updated 6 years ago
• uio-cels / genomicgraphcoords
  Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes
  ☆11Updated 7 years ago
• sjackman / uniqtag
  Abbreviate strings to short, unique identifiers
  ☆24Updated 2 years ago
• sjackman / docker-bio
  Docker images of bioinformatics software
  ☆21Updated 7 years ago
• your-highness / normR
  Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.
  ☆11Updated 2 years ago
• BenLangmead / qtip
  Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities
  ☆24Updated 4 years ago
• ajrichards / htsint
  A Python library to work with high-throughput sequencing data in the context of data integration
  ☆14Updated 7 years ago
• Novartis / railroadtracks
  Railroadtracks is a Python package to handle connected computation steps for DNA and RNA Seq.
  ☆14Updated 9 years ago
• ialbert / bioawk-tools
  ☆13Updated this week
• yvdriess / precipes
  Parallel Recipes : parallel workflow execution made easy
  ☆13Updated 9 years ago
• sjackman / makefile-example
  An example of a data analysis pipeline using Make
  ☆17Updated 8 years ago
• shenlab-sinai / region_analysis
  A python script used to annotate genomic intervals.
  ☆18Updated 4 years ago
• brentp / toolshed
  python stuff I use
  ☆19Updated 4 years ago
• bartongroup / AlmostSignificant
  A server for maintaining high-throughput sequencing QC data
  ☆13Updated last year
• arq5x / ggd
  ☆43Updated 8 years ago
• koelling / dnacol
  Color DNA/RNA bases in terminal output
  ☆20Updated 7 years ago
• PanosFirmpas / bamToBigWig
  Directly create a bigwig file with signal derived from a sorted and indexed bam file.
  ☆11Updated 7 years ago
• alastair-droop / qsubsec
  Simple tokenised template system for SGE
  ☆10Updated last year
• daler / hubward
  Manage the visualization of large amounts of other people's [often messy] genomics data
  ☆18Updated 8 years ago
• tseemann / homebrew-bioinformatics-linux
  Homebrew formulae for bioinformatics software only available for Linux
  ☆27Updated 5 years ago
• quinlan-lab / vcftidy
  normalize, left-align, trim, validate and clean VCF files
  ☆20Updated 9 years ago
• epruesse / ymp
  Flexible omics pipeline
  ☆18Updated 2 months ago