Snakemake library for bioinformatics programs, with a focus on next-generation sequencing
☆22Feb 4, 2016Updated 10 years ago
Alternatives and similar repositories for snakemakelib
Users that are interested in snakemakelib are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Library of snakemake rules.☆13Oct 2, 2018Updated 8 years ago
- ☆17Sep 24, 2013Updated 13 years ago
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Sep 6, 2016Updated 10 years ago
- ChIP-seq peak calling with GC effects adjustment☆10Jul 5, 2018Updated 8 years ago
- Scalable RNA-seq analysis☆73Jan 12, 2021Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- perform genotype-phenotype-association tests on a VCF with logistic regression.☆20Dec 15, 2015Updated 10 years ago
- ☆36Aug 13, 2020Updated 6 years ago
- ☆15Mar 7, 2016Updated 10 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Aug 19, 2017Updated 9 years ago
- Sample an approximate number of reads from a fastq file without reading the entire file☆11Jun 20, 2017Updated 9 years ago
- Shape analysis of high-throughput data☆19Feb 24, 2016Updated 10 years ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆46Jun 16, 2026Updated 3 months ago
- ☆18Jul 9, 2018Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Analysis from kallisto paper☆32Feb 10, 2016Updated 10 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Mar 3, 2017Updated 9 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆26Dec 11, 2017Updated 8 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19May 13, 2016Updated 10 years ago
- Tutorial with snakemake and Scientific Filesystem☆16Nov 11, 2020Updated 5 years ago
- Subsampling of high-throughput sequencing count data☆20May 10, 2019Updated 7 years ago
- A python script used to annotate genomic intervals.☆18May 29, 2020Updated 6 years ago
- Convert QIIME files into Oligotyping subsets.☆15Dec 10, 2014Updated 11 years ago
- Spectral and reproducibility analysis of Hi-C contact maps☆13Mar 18, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Tool to easily start up an IPython cluster on different schedulers.☆147May 1, 2020Updated 6 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 4 months ago
- vcf file manipulation☆22Jul 9, 2015Updated 11 years ago
- variant discovery and annotation using GATK and Ensembl☆17Jun 27, 2013Updated 13 years ago
- Infrastructure code to support DNA pipeline☆38May 5, 2015Updated 11 years ago
- Documentation of the Snakemake-Profiles project.☆55Mar 15, 2022Updated 4 years ago
- Generate mutated sequence files from a reference genome.☆11Jun 12, 2026Updated 3 months ago
- ☆10Dec 12, 2017Updated 8 years ago
- Unix-based RNA-seq quantification pipeline☆10Nov 18, 2015Updated 10 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Homebrew repository for CloudBioLinux: incubator for formulas to end up in homebrew-science☆19Oct 17, 2016Updated 9 years ago
- Request for comments on interchangeable bioinformatics containers☆39Jun 18, 2019Updated 7 years ago
- A tool for Read Multi-Mapper Resolution☆24Feb 15, 2017Updated 9 years ago
- fast bloomfilter☆21May 13, 2014Updated 12 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 5 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Feb 14, 2022Updated 4 years ago
- The open source version of the Melbourne Genomics Health Alliance Exome Sequencing Pipeline☆33Jan 20, 2018Updated 8 years ago