percyfal / snakemakelib
Snakemake library for bioinformatics programs, with a focus on next-generation sequencing
☆22Updated 9 years ago
Alternatives and similar repositories for snakemakelib:
Users that are interested in snakemakelib are comparing it to the libraries listed below
- Library of snakemake rules.☆12Updated 6 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 6 years ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Updated 8 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- Simple tool to verticalize text delimited files.☆36Updated 10 months ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 5 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆39Updated 7 years ago
- a wee tool for random access into BGZF files.☆84Updated 6 years ago
- Mapped QC analysis program☆43Updated 6 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Fast fusion detection using kallisto☆80Updated 4 months ago
- A collection of well-known bioinformatics programs.☆25Updated 9 years ago
- normalize, left-align, trim, validate and clean VCF files☆20Updated 9 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- Retrieve data in genomic intervals with a Python interface for tabix.☆82Updated 7 years ago
- A tool to benchmark mappers and different parameters within minutes☆43Updated 5 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- Collection of CGAT NGS Pipelines☆43Updated 6 years ago
- The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data☆30Updated 7 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- Basic, no assumptions, multi-pileup☆24Updated 10 years ago
- The command-line interface to GGD☆42Updated 2 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated 2 weeks ago
- Tandem Repeat Annotation Library☆24Updated last year
- ☆37Updated 4 years ago
- Deprecated : Use https://github.com/drpowell/degust☆44Updated 7 years ago