percyfal / snakemakelib
Snakemake library for bioinformatics programs, with a focus on next-generation sequencing
☆22Updated 9 years ago
Alternatives and similar repositories for snakemakelib:
Users that are interested in snakemakelib are comparing it to the libraries listed below
- Library of snakemake rules.☆12Updated 6 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- a wee tool for random access into BGZF files.☆84Updated 6 years ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Updated 8 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- Retrieve data in genomic intervals with a Python interface for tabix.☆82Updated 7 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel☆28Updated 7 months ago
- Analysis from kallisto paper☆32Updated 9 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆41Updated 7 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- Mapped QC analysis program☆43Updated 6 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- The gkno launcher for executing tools or pipelines☆31Updated 8 years ago
- Deprecated : Use https://github.com/drpowell/degust☆44Updated 7 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Fast fusion detection using kallisto☆80Updated 5 months ago
- Visualise interstrain recombination from environmental samples.☆26Updated 5 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- normalize, left-align, trim, validate and clean VCF files☆20Updated 9 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 5 years ago
- Tools for bam file processing☆55Updated 9 years ago
- ☆37Updated 4 years ago
- SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer sampl…☆60Updated 5 months ago
- Basic, no assumptions, multi-pileup☆24Updated 11 years ago
- Convert genetic variants to minimal representation☆23Updated 7 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- ☆38Updated 2 months ago