Alternatives and similar repositories for snakemakelib

Users that are interested in snakemakelib are comparing it to the libraries listed below

• percyfal / snakemake-rules
  Library of snakemake rules.
  ☆12Updated 6 years ago
• arq5x / cyvcf
  A fast Python library for VCF files leveraging Cython for speed.
  ☆52Updated 7 years ago
• arq5x / grabix
  a wee tool for random access into BGZF files.
  ☆84Updated 7 years ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆85Updated 3 years ago
• bcbio / bcbio.variation.recall
  Parallel merging, squaring off and ensemble calling for genomic variants
  ☆20Updated 5 years ago
• mjsull / HapFlow
  Visualise interstrain recombination from environmental samples.
  ☆26Updated 6 years ago
• slowkow / picardmetrics
  Run Picard on BAM files and collate 90 metrics into one file.
  ☆41Updated 7 years ago
• pachterlab / kallisto_paper_analysis
  Analysis from kallisto paper
  ☆32Updated 9 years ago
• BauerLab / ngsane
  Analysis Framework for Biological Data from High Throughput Experiments
  ☆34Updated 8 years ago
• ngsutils / ngsutils
  Tools for next-generation sequencing analysis
  ☆88Updated 6 years ago
• nilesh-tawari / ChronQC
  Manuscript describing ChronQC is now available online in Bioinformatics
  ☆18Updated 6 years ago
• lh3 / fermi-lite
  Standalone C library for assembling Illumina short reads in small regions
  ☆72Updated 2 years ago
• peterjc / picobio
  Miscellaneous Bioinformatics scripts etc mostly in Python
  ☆45Updated 3 weeks ago
• slowkow / pytabix
  Retrieve data in genomic intervals with a Python interface for tabix.
  ☆82Updated 7 years ago
• brentp / indelope
  find large indels (in the blind spot between GATK/freebayes and SV callers)
  ☆39Updated 7 years ago
• s-andrews / BamQC
  Mapped QC analysis program
  ☆44Updated 7 years ago
• quinlan-lab / vcftidy
  normalize, left-align, trim, validate and clean VCF files
  ☆20Updated 9 years ago
• ericminikel / minimal_representation
  Convert genetic variants to minimal representation
  ☆23Updated 7 years ago
• alimanfoo / vcfnp
  Load numpy arrays and HDF5 files from VCF (variant call format)
  ☆31Updated 7 years ago
• cc2qe / vawk
  An awk-like VCF parser
  ☆56Updated last year
• Victorian-Bioinformatics-Consortium / degust
  Deprecated : Use https://github.com/drpowell/degust
  ☆44Updated 8 years ago
• gogetdata / ggd-cli
  The command-line interface to GGD
  ☆43Updated 2 years ago
• DecodeGenetics / BamHash
  ☆37Updated 4 years ago
• cancerit / cgpPindel
  Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel
  ☆28Updated last month
• gt1 / biobambam
  Tools for bam file processing
  ☆55Updated 10 years ago
• gis-rpd / pipelines
  RPD Pipelines
  ☆27Updated 6 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 5 years ago
• dzerbino / oases
  De novo transcriptome assembler for short reads
  ☆62Updated 7 years ago
• macarthur-lab / igv_utils
  utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.
  ☆49Updated 6 years ago
• CGATOxford / CGATPipelines
  Collection of CGAT NGS Pipelines
  ☆43Updated 6 years ago