The BTL C/C++ Common bloom filters for bioinformatics projects, as well as any APIs created for other programming languages.
☆18Feb 26, 2022Updated 4 years ago
Alternatives and similar repositories for btl_bloomfilter
Users that are interested in btl_bloomfilter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A hash map using the BooPHF perfect hash function☆13Sep 25, 2016Updated 9 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 9 years ago
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆95Apr 1, 2026Updated last week
- ☆15Apr 6, 2016Updated 10 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- A list of weak Bacterial assemblies in GenBank☆18Aug 3, 2017Updated 8 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Jul 12, 2021Updated 4 years ago
- de Bruijn Graph REAd mapping Tool☆14Jul 12, 2017Updated 8 years ago
- Minimal docker image for bwa. Not developed any more.☆11Apr 26, 2015Updated 10 years ago
- A pipeline for detecting mis-assemblies in metagenomic assemblies.☆14Nov 3, 2017Updated 8 years ago
- ☆15Mar 7, 2016Updated 10 years ago
- Create Bloom filters for a given reference and then use it to categorize sequences☆77Nov 26, 2024Updated last year
- A Python wrapper for the bbhash library for Minimal Perfect Hashing☆19Oct 26, 2025Updated 5 months ago
- Identifying repeats in high-throughput sequencing data☆16Apr 12, 2024Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Nov 27, 2025Updated 4 months ago
- ☆11Mar 10, 2024Updated 2 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆73Mar 27, 2026Updated last week
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆53Mar 12, 2024Updated 2 years ago
- 📚Bioinformatics Technology Lab common code library☆29Mar 30, 2026Updated last week
- Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"☆64Oct 15, 2020Updated 5 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49May 25, 2021Updated 4 years ago
- Docker images of bioinformatics software☆21Jun 15, 2017Updated 8 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Jan 18, 2019Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Host depletion optimised for clinical metagenomic sequencing applications☆16Nov 18, 2024Updated last year
- StriDe Assembler☆25Nov 23, 2017Updated 8 years ago
- Streaming fragment assignment and quantification for high-throughput sequencing.☆38Nov 14, 2019Updated 6 years ago
- dynamic-updateable-index☆11Nov 10, 2015Updated 10 years ago
- miscellaneous script-like stuff in go for bioinformatics☆14Nov 4, 2016Updated 9 years ago
- deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph☆31Jan 19, 2021Updated 5 years ago
- Real-time species-typing visualisation for nanopore data.☆13Apr 11, 2023Updated 2 years ago
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Sep 23, 2017Updated 8 years ago
- Detection of structural variants in cancer mate-pair and paired-end data☆13May 3, 2019Updated 6 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Benchmark of four minimal perfect hash libraries (phf, emphf, CMPH, Sux4J)☆14Apr 6, 2017Updated 9 years ago
- A Python library for reading and writing PacBio® data files☆41Mar 6, 2026Updated last month
- Self-contained, multi-threaded fasta/q parser☆48Mar 10, 2026Updated 3 weeks ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- ☆14Jan 20, 2016Updated 10 years ago
- Code for building and testing variant ranking strategies☆17Aug 22, 2025Updated 7 months ago
- Tools for early stage alignment file processing☆96Mar 12, 2019Updated 7 years ago