RealTimeGenomics / rtg-coreLinks
RTG Core: Software for alignment and analysis of next-gen sequencing data.
☆48Updated 4 months ago
Alternatives and similar repositories for rtg-core
Users that are interested in rtg-core are comparing it to the libraries listed below
Sorting:
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- UCSC Nanopore☆43Updated 6 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆57Updated last month
- 10x Genomics Reads Simulator☆45Updated last year
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- an empirical Bayesian framework for mutation detection from cancer genome sequencing data☆31Updated 9 years ago
- Structural Variant Index☆75Updated 9 months ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆33Updated 2 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Thousand Variant Callers Project Repository☆73Updated 5 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆49Updated 7 years ago
- An awk-like VCF parser☆56Updated last year
- Analysis tool for Nanopore sequencing data☆34Updated 6 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- High-performance error correction for Illumina resequencing data☆73Updated 9 years ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Updated 11 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls☆45Updated 3 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆53Updated 7 years ago