RealTimeGenomics / rtg-coreLinks
RTG Core: Software for alignment and analysis of next-gen sequencing data.
☆47Updated last week
Alternatives and similar repositories for rtg-core
Users that are interested in rtg-core are comparing it to the libraries listed below
Sorting:
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- Structural Variant Index☆74Updated 5 months ago
- High-performance error correction for Illumina resequencing data☆71Updated 9 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- An awk-like VCF parser☆56Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆77Updated last year
- Read visualizer for structural variants☆84Updated 6 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Python package and routines for merging VCF files☆29Updated 4 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- Aligner for sequencing data☆21Updated 9 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 7 years ago
- Thousand Variant Callers Project Repository☆72Updated 5 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- ☆53Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data☆30Updated 7 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆101Updated 4 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- UCSC Nanopore☆43Updated 5 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆95Updated 5 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆32Updated last month
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- ☆39Updated last year