A chromosome-level polyploid phasing scaffolding tool
☆18Aug 27, 2026Updated this week
Alternatives and similar repositories for GPhase
Users that are interested in GPhase are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C, Omni-C).☆109Jul 23, 2026Updated last month
- Dynamic Elongation of a Genome Assembly Path☆28Jul 27, 2026Updated last month
- PPL (Pore-C PipLine) is a set of tools to process, evaluate and visualize the multi-way contacts experiment based on 3C and ONT long read…☆16Apr 22, 2025Updated last year
- A gap-closing software tool that uses long reads to enhance genome assembly.☆24Apr 25, 2024Updated 2 years ago
- Consensus genome annotation using OMA☆32Jan 14, 2026Updated 7 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆28May 12, 2026Updated 3 months ago
- Enumerating bubbles in pangenome graphs☆16Updated this week
- ☆13May 27, 2025Updated last year
- a Semi-automated pipeline for assembling T2T genome☆29Oct 16, 2025Updated 10 months ago
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated 2 years ago
- Tools for working with agp files☆19Jun 26, 2025Updated last year
- A KMER-based genome-wIde Assocation testing approach on polyploids☆68Jul 29, 2026Updated last month
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆280Aug 10, 2026Updated 2 weeks ago
- ☆27Jun 27, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- a gap-filling tools of genome in complex region.☆28Dec 30, 2025Updated 8 months ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 9 months ago
- Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat☆29Apr 24, 2026Updated 4 months ago
- Ploidy agnostic phasing pipeline and algorithm☆50Jan 3, 2024Updated 2 years ago
- ☆24Nov 19, 2025Updated 9 months ago
- ☆24Feb 26, 2026Updated 6 months ago
- PhaseGrass, a reference-based phasing workflow generating chromosome-level haplotype-resolved diploid assembly for highly heterozygous ge…☆17Jun 2, 2026Updated 2 months ago
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆181Jun 23, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Robust identification of orthologous Synteny with the Orthology Index☆43Aug 22, 2026Updated last week
- Tool for fully-automated inference of species trees from raw genome assemblies☆50Updated this week
- JTK -- a regional diploid genome assembler☆26Apr 22, 2026Updated 4 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆23Aug 1, 2024Updated 2 years ago
- ☆19Jul 12, 2026Updated last month
- Efficient retrieval, download, and unification of genomic data from leading biodiversity databases☆18Aug 22, 2026Updated last week
- adaptive genome assembly using nanopore sequencing☆27Updated this week
- Error correction of long reads☆16Jan 30, 2026Updated 7 months ago
- High throughput python tool for mining and analysis of gene duplications.☆16Jul 30, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆77Jun 4, 2026Updated 2 months ago
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆26Mar 11, 2023Updated 3 years ago
- use long sequenced reads to close gaps in assemblies☆39Sep 4, 2018Updated 7 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- Genome annotation pre-publication results☆39Updated this week
- Telomere compliment tools☆26Nov 17, 2025Updated 9 months ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year