Alternatives and similar repositories for mario-py:

Users that are interested in mario-py are comparing it to the libraries listed below

• wanglab-broad / CAST
  CAST package
  ☆27Updated 3 months ago
• YingMa0107 / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆30Updated this week
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆24Updated 2 weeks ago
• raphael-group / paste2
  Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
  ☆33Updated last year
• zcang / SpaOTsc
  ☆45Updated 2 years ago
• dpeerlab / ENVI
  ☆43Updated 3 months ago
• theislab / scArches-reproducibility
  Reproducing result from the paper
  ☆33Updated 3 years ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆32Updated this week
• zhengli09 / BASS
  Bayesian Analytics for Spatial Segmentation
  ☆22Updated 3 months ago
• raphael-group / STARCH
  Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
  ☆22Updated 6 months ago
• LiHongCSBLab / SOAPy
  ☆18Updated 2 weeks ago
• theislab / multimil
  Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases
  ☆21Updated 2 months ago
• whhudson / spatialTCR
  ☆12Updated 2 years ago
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• masai1116 / SHARE-seq-alignment
  pipeline for demultiplex and align both ATAC and RNA data generated in SHARE-seq
  ☆16Updated 2 years ago
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆33Updated 6 months ago
• AllonKleinLab / paper-data
  ☆19Updated 3 weeks ago
• drieslab / awesome-spatial-data-analysis
  Awesome list of tools and methods to perform spatial transcriptomic data analysis.
  ☆39Updated 3 years ago
• AllonKleinLab / cospar
  ☆26Updated last year
• theislab / ncem_tutorials
  ☆12Updated 2 years ago
• xiaoyeye / TFvelo
  ☆44Updated 8 months ago
• prabhakarlab / Banksy_py
  ☆36Updated last month
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆67Updated last month
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆29Updated this week
• KChen-lab / bindSC
  Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…
  ☆34Updated last year
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆42Updated last year
• YangLabHKUST / Portal
  Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets
  ☆30Updated last year
• Moldia / Xenium_benchmarking
  Code used to benchmark Xenium
  ☆42Updated 7 months ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆48Updated this week
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆60Updated 9 months ago