R package for single-cell comparative regulatory analysis
☆13Jun 26, 2021Updated 5 years ago
Alternatives and similar repositories for sc-compReg
Users that are interested in sc-compReg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Probability Model of Accessible Chromatin of Single cells☆11Aug 14, 2026Updated 2 months ago
- CCCvelo: Decoding dynamic cell-cell communication-driven cell state transitions in spatial transcriptomics☆13Sep 14, 2026Updated last month
- Fast and Scalable Single Cell Differential Expression Analysis using Mixed-effects Models☆14Apr 8, 2026Updated 6 months ago
- ☆12Dec 10, 2025Updated 10 months ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq at locus- or subfamily-level☆27Aug 25, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆18Jul 29, 2025Updated last year
- Multivariate stochastic modeling for transcriptional dynamics with cell-specific latent time using SDEvelo☆23Jan 28, 2025Updated last year
- Code to implement the hierarchical cross-entropy loss for single-cell annotation models☆26Jul 17, 2026Updated 3 months ago
- Pathway-Level Single-Cell Functional Profiling of Individual Patient Samples☆11Aug 6, 2025Updated last year
- Visualize the results of cell-cell communication analysis☆26Jan 21, 2023Updated 3 years ago
- Bayesian model for RNA velocity estimation of periodic manifolds☆36Jun 25, 2024Updated 2 years ago
- TemporalVAE: dual-objective VAE for time prediction in single cells☆13Sep 13, 2025Updated last year
- A scalable method to infer fate specific gene regulatory network from single cell gene expression data☆10Jan 21, 2025Updated last year
- scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies☆11Oct 27, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Rigorous integration of single-cell ATAC-seq data using regularized barycentric mapping☆11Aug 30, 2025Updated last year
- ☆15May 3, 2026Updated 6 months ago
- ☆13Jan 27, 2025Updated last year
- ☆35Jun 12, 2024Updated 2 years ago
- ☆12Aug 15, 2025Updated last year
- Analysis code for the TAP-seq manuscript.☆13Jun 25, 2021Updated 5 years ago
- Code for tidymass2 manuscript☆11Dec 15, 2025Updated 10 months ago
- ☆13Feb 2, 2023Updated 3 years ago
- Assemble and following pipeline used in wisent genome paper.☆18Dec 23, 2016Updated 9 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Surface Marker Detection Using Single Cell Data☆13Apr 21, 2026Updated 6 months ago
- Paint chromosomes with BUSCOs☆10Sep 25, 2026Updated last month
- Deconvolution of spatial transcriptomics at single-cell resolution☆23Mar 25, 2026Updated 7 months ago
- R implementation of integration metrics for single-cell data☆14Sep 23, 2026Updated last month
- ☆24Aug 17, 2026Updated 2 months ago
- ☆15Sep 29, 2026Updated last month
- R package for scMultiMap, a statistical method for cell-type-specific mapping of enhancer-gene pairs with single-cell multimodal data☆10Jun 12, 2025Updated last year
- cross-species analysis of cell identities, markers and regulations☆13Jul 11, 2025Updated last year
- SIDISH: Semi-supervised Iterative Deep Learning for Identifying Single-cell High-risk Populations☆26Jul 30, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆13Nov 20, 2023Updated 2 years ago
- Data analysis for the moscot-framework project☆27Feb 27, 2026Updated 8 months ago
- scPair: Boosting single cell multimodal analysis by leveraging single cell atlases and implicit feature selection☆13Sep 8, 2025Updated last year
- ☆15Nov 11, 2019Updated 6 years ago
- ☆14Nov 3, 2023Updated 3 years ago
- NCBI download and Orthofinder analysis☆14Jun 17, 2022Updated 4 years ago
- Cell type-specific SVG detection☆10Jan 28, 2026Updated 9 months ago