ZhiGroup / RaPID

Related projects ⓘ

Alternatives and complementary repositories for RaPID

• astrazeneca-cgr-publications / JARVIS
  JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes
  ☆22Updated 3 weeks ago
• CshlSiepelLab / LINSIGHT
  ☆24Updated 5 months ago
• ywchoi / phasing
  Evaluation of phasing performance
  ☆21Updated 6 years ago
• aquaskyline / 16GT
  Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
  ☆27Updated 10 months ago
• mcveanlab / TreeWAS
  ☆15Updated 7 years ago
• macarthur-lab / tx_annotation
  Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…
  ☆33Updated 2 years ago
• tkzeng / GeneBayes
  ☆20Updated 7 months ago
• ramachandran-lab / SWIFr
  Sweep Inference Framework (controlling for correlation)
  ☆28Updated 4 months ago
• msesia / knockoffgwas
  A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.
  ☆14Updated 2 years ago
• ajaynadig / bhr
  Suite of heritability and genetic correlation estimation tools for exome-sequencing data
  ☆31Updated last month
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆28Updated 3 months ago
• atgu / hgdp_tgp
  ☆36Updated last month
• astrazeneca-cgr-publications / PEACOK
  Phenome Exome Association and Correlation Of Key phenotypes
  ☆24Updated 3 years ago
• HurlesGroupSanger / DeNovoWEST
  ☆21Updated 3 months ago
• healthdisparities / rye
  Large scale ancestry inference from PCA data
  ☆21Updated last year
• gagneurlab / absplice
  ☆33Updated 2 months ago
• karltayeb / cafeh
  ☆11Updated last year
• Mesh89 / TranSurVeyor
  A transposition caller.
  ☆10Updated last year
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆27Updated 2 weeks ago
• montilab / nf-gwas-pipeline
  A Nextflow Genome-Wide Association Study (GWAS) Pipeline
  ☆30Updated 6 months ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆41Updated 2 years ago
• broadinstitute / VariantBam
  Filtering and profiling of next-generational sequencing data using region-specific rules
  ☆25Updated 8 years ago
• ikmb / eagleimp
  ☆22Updated this week
• tf2 / CNest
  Copy Number Methods for Detection and Genome Wide Association Tests
  ☆22Updated 2 weeks ago
• HannahVMeyer / PhenotypeSimulator
  ☆28Updated 9 months ago
• rgcgithub / clamms
  CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.
  ☆29Updated 3 years ago
• cauyrd / transIndel
  Indel caller for DNA-seq or RNA-seq
  ☆14Updated last year
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆26Updated 3 months ago
• gymreklab / mutea-autosomal
  Mutation rate analysis of autosomal loci
  ☆14Updated 4 years ago
• hmgu-itg / VCF-liftover
  Liftover VCF files
  ☆16Updated 7 years ago