ZhiGroup / RaPIDLinks
☆32Updated 3 years ago
Alternatives and similar repositories for RaPID
Users that are interested in RaPID are comparing it to the libraries listed below
Sorting:
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆33Updated 3 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Evaluation of phasing performance☆23Updated 7 years ago
- Work for the tree sequence inference paper.☆23Updated 4 years ago
- Sweep Inference Framework (controlling for correlation)☆29Updated last year
- ☆26Updated 3 months ago
- Identity-by-descent inference using the templated positional Burrows-Wheeler transform (TPBWT)☆45Updated 2 years ago
- ☆44Updated 3 months ago
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆36Updated 5 years ago
- Haplotype and population structure inference using neural networks.☆27Updated 10 months ago
- Large scale ancestry inference from PCA data☆23Updated 2 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Updated 5 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Updated 6 years ago
- ☆33Updated 4 years ago
- Mutation rate analysis of autosomal loci☆15Updated 5 years ago
- ☆51Updated 6 years ago
- Genetic maps interpolated to sites in the 1000 Genomes project☆50Updated 10 years ago
- ☆22Updated 3 weeks ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated 2 months ago
- Indel caller for DNA-seq or RNA-seq☆16Updated 2 years ago
- ☆23Updated 10 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Fast and scalable variant annotation tool☆30Updated 3 years ago
- ☆40Updated 7 years ago
- ☆26Updated 4 months ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆32Updated 3 years ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 5 years ago