freeseek / mochaLinks
MOsaic CHromosomal Alterations (MoChA) caller
☆86Updated 5 months ago
Alternatives and similar repositories for mocha
Users that are interested in mocha are comparing it to the libraries listed below
Sorting:
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆105Updated 4 years ago
- BISulfite-seq CUI Toolkit☆65Updated 6 months ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆131Updated 11 months ago
- Burden testing against public controls☆50Updated last year
- Battenberg R package for subclonal copynumber estimation☆89Updated last month
- Enhanced version of the FastQTL QTL mapper☆67Updated 2 years ago
- Tools to work with GWAS-VCF summary statistics files☆123Updated 3 weeks ago
- Battenberg algorithm and associated implementation script☆53Updated 4 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 5 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆54Updated 4 years ago
- CrossMap is a python program to lift over genome coordinates from one genome version to another.☆85Updated last month
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆50Updated 3 weeks ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 5 months ago
- Software program for checking sample matching for NGS data☆134Updated last year
- ☆70Updated 2 years ago
- QDNAseq package for Bioconductor☆50Updated last year
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆53Updated last year
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆150Updated last week
- Publication quality NGS track plotting☆114Updated 3 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- ☆21Updated 2 weeks ago
- Allele-specific alignment sorting☆58Updated 2 years ago
- Script to convert GTC/BPM files to VCF☆47Updated 11 months ago
- Reference data: BED files, genes, transcripts, variations.☆83Updated 7 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated 11 months ago
- Characterization of Germline variants☆98Updated 3 years ago
- ☆40Updated 7 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago