freeseek / mocha
MOsaic CHromosomal Alterations (MoChA) caller
☆86Updated 2 months ago
Alternatives and similar repositories for mocha:
Users that are interested in mocha are comparing it to the libraries listed below
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Updated 4 years ago
- Battenberg R package for subclonal copynumber estimation☆86Updated last month
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆69Updated 8 months ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆52Updated 4 years ago
- Burden testing against public controls☆50Updated last year
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆47Updated 3 weeks ago
- phasing and Allele Specific Expression from RNA-seq☆114Updated 9 months ago
- Enhanced version of the FastQTL QTL mapper☆64Updated 2 years ago
- WisecondorX — An evolved WISECONDOR☆97Updated 7 months ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆53Updated last year
- Software program for checking sample matching for NGS data☆130Updated 10 months ago
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 2 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆54Updated 2 years ago
- Tools to work with GWAS-VCF summary statistics files☆118Updated 7 months ago
- Relevant papers for CNV and SV approaches☆94Updated 6 months ago
- Reference data: BED files, genes, transcripts, variations.☆83Updated 7 years ago
- QDNAseq package for Bioconductor☆50Updated 9 months ago
- ☆21Updated this week
- Allele-specific alignment sorting☆55Updated 2 years ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- ☆72Updated 2 weeks ago
- Segmented HAPlotype Estimation and Imputation Tool☆80Updated 8 months ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.☆71Updated 2 weeks ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆103Updated 4 years ago
- Battenberg algorithm and associated implementation script☆52Updated 4 years ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆110Updated 2 weeks ago
- Data and information about the Polaris study☆53Updated 5 years ago