VIDA-NYU / bdi-kitLinks
A Python toolkit for biomedical data integration and harmonization
☆10Updated this week
Alternatives and similar repositories for bdi-kit
Users that are interested in bdi-kit are comparing it to the libraries listed below
Sorting:
- PlaNet: Predicting population response to drugs via clinical knowledge graph☆29Updated 2 months ago
- Ensemble Integration: a customizable pipeline for generating multi-modal, heterogeneous ensembles☆20Updated 7 months ago
- Template for creating a BioCypher-driven knowledge graph☆12Updated this week
- Map your disease and phenotype terms to the Open Targets platform ontology☆21Updated 6 months ago
- A Jupyter widget for comparing two embeddings with shared labels by their confusion, neighborhoods, and size.☆44Updated 6 months ago
- Madrigal: Multimodal AI predicts clinical outcomes of drug combinations from preclinical data☆24Updated 2 months ago
- Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!☆14Updated 11 months ago
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)☆35Updated this week
- ClinVec: Unified Embeddings of Clinical Codes Enable Knowledge-Grounded AI in Medicine☆58Updated last month
- Workflow to generate interactive feature selection report for cross-sectional or longitudinal studies☆9Updated 3 weeks ago
- The public repository for the Proteomic Data Commons UI and APIs☆14Updated last year
- Interactive & explainable GNN for drug repurposing☆12Updated last year
- Dynamic visualization of Electronic Health Record data in the OMOP framework☆28Updated 4 years ago
- Causal Structure Learning and Network Analysis with Structural Equation Modeling.☆25Updated 3 months ago
- BioDWH2 is an easy-to-use, automated, graph-based data warehouse and mapping tool for bioinformatics and medical informatics.☆16Updated last week
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)☆21Updated 3 years ago
- ETL UK-Biobank☆13Updated 2 years ago
- A Python module for loading phenotypic and genetic data from the UK Biobank.☆35Updated 4 years ago
- Example notebooks that illustrate how to generate knowledge-based features. Features can be used in a variety of ML models, including rec…☆11Updated 3 years ago
- R package for delineating temporal dataset shifts in Eletronic Health Records☆17Updated last year
- Similarity search in heterogeneous knowledge graphs using meta paths.☆26Updated 2 years ago
- Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank☆24Updated 4 years ago
- https://celehs.github.io/PheCAP/☆21Updated 3 years ago
- A fast and programmatic MELODI☆16Updated last year
- R package with netDx software and data for examples☆12Updated 2 years ago
- Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆41Updated last month
- 🎡 Unified access to OLS instances like from the EBI and TIB☆12Updated last year
- ☆18Updated 11 months ago
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.☆32Updated 10 months ago
- Diverse and generative ML benchmarks☆16Updated 2 years ago