broadinstitute / celligner
tumor - cancer cell line alignment. Use it on the depmap portal or install it with pip.
☆11Updated last year
Alternatives and similar repositories for celligner:
Users that are interested in celligner are comparing it to the libraries listed below
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆40Updated last year
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 3 weeks ago
- Spatially-resolved Transcriptomics via Epitope Anchoring☆18Updated last year
- Code to reproduce TNBC analysis and figures☆23Updated 2 years ago
- scID☆13Updated 3 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 5 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 3 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 4 years ago
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- ☆12Updated last week
- ☆21Updated 3 years ago
- Single-cell Case Control Analysis☆48Updated 4 months ago
- Computational identification of targets for CAR-T cell therapy in AML☆16Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆24Updated 3 years ago
- A modular tool for proportion analysis in single-cell sequencing data☆18Updated last month
- ☆12Updated last month
- Materials and scripts for building cell type encyclopedia table☆19Updated 2 months ago
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Updated last year
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆19Updated 9 months ago
- ZornLab / Single-cell-transcriptomics-reveals-a-signaling-roadmap-coordinating-endoderm-and-mesoderm-lineageCode and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆9Updated 4 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆33Updated 3 weeks ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- ☆23Updated 2 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆19Updated last year
- Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney☆16Updated last year
- ☆16Updated 8 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆29Updated 7 months ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- Hotspot cluster distance analysis in spatial transcriptomic data☆25Updated last month