broadinstitute / cellignerLinks
tumor - cancer cell line alignment. Use it on the depmap portal or install it with pip.
☆11Updated last year
Alternatives and similar repositories for celligner
Users that are interested in celligner are comparing it to the libraries listed below
Sorting:
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 4 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated 2 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated last week
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Updated 2 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- ☆19Updated 3 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Computational identification of targets for CAR-T cell therapy in AML☆17Updated 2 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- ☆17Updated last year
- Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection☆14Updated last year
- Materials and scripts for building cell type encyclopedia table☆19Updated 6 months ago
- Vaeda method for computational doublet annotation☆17Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆13Updated 2 years ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆11Updated 9 months ago
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15Updated 3 years ago
- Code to reproduce TNBC analysis and figures☆24Updated 3 years ago
- A modular tool for proportion analysis in single-cell sequencing data☆22Updated 2 months ago
- Using BCR and expression for sequence embedding☆24Updated this week
- Reproducibility notebooks for scPoli☆18Updated 2 years ago
- ☆12Updated 4 years ago
- ☆23Updated 3 years ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆32Updated 4 months ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆18Updated 3 years ago
- ☆22Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 9 months ago