☆12Nov 23, 2023Updated 2 years ago
Alternatives and similar repositories for CONIPHER-wrapper
Users that are interested in CONIPHER-wrapper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Git repo for CONIPHER tree building☆27Mar 20, 2025Updated last year
- ☆11May 26, 2023Updated 3 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Feb 19, 2020Updated 6 years ago
- An R package to plot maps of clone distributions in somatic evolution☆20Aug 3, 2026Updated 2 months ago
- Repository for the Sequoia phylogeny reconstruction pipeline☆11Feb 17, 2026Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆13Nov 21, 2023Updated 2 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22May 21, 2024Updated 2 years ago
- Clonality inference in multiple tumor samples using phylogeny☆14Sep 12, 2017Updated 9 years ago
- Related to (Zaccaria and Raphael, 2018), the repository contains the simulated data, the results of all methods involved in the compariso…☆12Dec 31, 2021Updated 4 years ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Jan 29, 2026Updated 8 months ago
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆72Sep 29, 2026Updated 3 weeks ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Jul 27, 2023Updated 3 years ago
- Building a Singularity image of Polysolver☆10Dec 13, 2019Updated 6 years ago
- Snakemake workflow for neoantigen prediction☆15Sep 7, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11Mar 29, 2024Updated 2 years ago
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Nov 28, 2023Updated 2 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆17Feb 17, 2021Updated 5 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆51Apr 16, 2021Updated 5 years ago
- Simulate next-generation sequencing reads for tumor samples☆11Apr 25, 2021Updated 5 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆15Jan 15, 2017Updated 9 years ago
- Clonal structure identification through penalizing pairwise differences☆11Sep 29, 2026Updated 3 weeks ago
- ☆22Apr 16, 2024Updated 2 years ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆23Nov 16, 2020Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Data Structures for Bioinformatics - LM Bioinformatics - University of Rome Tor Vergata☆12Updated this week
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Aug 14, 2023Updated 3 years ago
- ☆13Jan 8, 2026Updated 9 months ago
- ☆13Jul 26, 2026Updated 2 months ago
- ABSOLUTE source code that works with allelic copy ratio on both hg19 and hg38☆18Nov 5, 2025Updated 11 months ago
- ☆13Apr 16, 2026Updated 6 months ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆21Jan 17, 2020Updated 6 years ago
- ☆49Jan 7, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆27Jul 30, 2022Updated 4 years ago
- PRecise Identification of Species of the Microbiome☆16Apr 29, 2026Updated 5 months ago
- Pipeline to detect HLA disruption from WES and RNAseq data☆23Feb 17, 2025Updated last year
- Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…☆18Nov 13, 2024Updated last year
- ☆18Jan 30, 2023Updated 3 years ago
- Framework for Metastatic And Clonal History INtegrative Analysis☆39Mar 5, 2021Updated 5 years ago
- AESTETIK: Convolutional autoencoder for learning spot representations from spatial transcriptomics and morphology data☆28Aug 18, 2026Updated 2 months ago