Alternatives and similar repositories for G2PT

Users that are interested in G2PT are comparing it to the libraries listed below

• Xinglab / IRIS
  IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening
  ☆24Updated 9 months ago
• CamaraLab / TDA-TCGA
  R package for the identification of cancer-associated mutated genes using gene expression and mutation data.
  ☆10Updated 3 years ago
• KellisLab / scdemon
  single-cell decorrelated module networks
  ☆23Updated 9 months ago
• Townsend-Lab-Yale / cancereffectsizeR
  cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer
  ☆18Updated 2 weeks ago
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆51Updated 3 months ago
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆39Updated 2 years ago
• dwgoon / nezzle
  Network Visualization using both GUI and Programming
  ☆28Updated last week
• fogellab / multiWGCNA
  an R package for deep mining gene co-expression networks in multi-trait expression data
  ☆19Updated last week
• Teddy-XiongGZ / DeepGSEA
  ☆17Updated 10 months ago
• dzhakparov / GeneSelectR
  ☆19Updated last year
• ericminikel / genetic_support
  Refining the impact of genetic evidence on clinical success
  ☆25Updated 10 months ago
• bhklab / Xeva
  XEnograft Visualization & Analysis
  ☆11Updated 2 months ago
• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆12Updated last year
• JD2112 / methylr
  methylR: a single shiny solution from sequencer data to pathway analysis
  ☆12Updated 7 months ago
• UMCUGenetics / mutSigExtractor
  An R package for extracting mutational signatures from vcf files
  ☆10Updated 3 months ago
• JamesJoly / DGSEA
  An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…
  ☆13Updated 2 years ago
• HelenaLC / simulation-comparison
  Snakemake workflow to benchmark scRNA-seq data simulators
  ☆13Updated 2 years ago
• YuLab-SMU / clusterProfiler_protocol
  omics data analysis using clusterProfiler ;)
  ☆13Updated last year
• yachielab / Interstellar
  INTERSTELLAR: Interpretation, scalable transformation, and emulation of large-scale sequencing reads
  ☆18Updated last year
• saezlab / ShinyFUNKI
  FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…
  ☆13Updated 3 years ago
• jishnu-lab / SLIDE
  ☆26Updated last month
• AlexsLemonade / scpca-nf
  scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data
  ☆13Updated last week
• qlu-lab / POP-TOOLS
  Valid and Powerful Machine-Learning-Assisted Genetic Association Studies
  ☆21Updated last week
• jokergoo / KeywordsEnrichment
  ☆32Updated last year
• hase62 / Neoantimon
  Published at Bioinformatics
  ☆12Updated 11 months ago
• suinleelab / PAUSE
  Code for paper "Principled feature attribution for unsupervised gene expression analysis"
  ☆11Updated 2 years ago
• opentargets / genetics-gold-standards
  GWAS gold standards repository
  ☆34Updated last year
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• astrazeneca-cgr-publications / PEACOK
  Phenome Exome Association and Correlation Of Key phenotypes
  ☆28Updated 3 years ago
• mbassalbioinformatics / ChIP-AP
  An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis
  ☆22Updated 7 months ago