velten-group / crispatView external linksLinks
☆17Apr 4, 2025Updated 10 months ago
Alternatives and similar repositories for crispat
Users that are interested in crispat are comparing it to the libraries listed below
Sorting:
- An end-to-end computational pipeline for large Perturb-seq screens☆15Apr 25, 2025Updated 9 months ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆35Sep 4, 2025Updated 5 months ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆23Oct 3, 2023Updated 2 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Jan 25, 2022Updated 4 years ago
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆25Jan 12, 2026Updated last month
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆29Oct 16, 2021Updated 4 years ago
- R package IReNA☆30Nov 13, 2024Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Apr 16, 2020Updated 5 years ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- Modeling of time series data for CRISPR KO experiments☆38Jan 5, 2026Updated last month
- Analysis pipeline for RNA structural probing mutational profiling data sequenced on Nanopore devices☆10Feb 10, 2024Updated 2 years ago
- Minimal scripts to reproduce the RADICL-seq analysis of the Nature Communications manuscript☆11Jan 30, 2020Updated 6 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆38Nov 10, 2025Updated 3 months ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆41Jun 18, 2023Updated 2 years ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆166Feb 25, 2025Updated 11 months ago
- A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq re…☆52Dec 7, 2025Updated 2 months ago
- Bivariate Shapley is a Shapley-based method of identifying directional feature interactions and feature redundancy☆20May 19, 2025Updated 8 months ago
- This is a read-only mirror of the CRAN R package repository. timeROC — Time-Dependent ROC Curve and AUC for Censored Survival Data☆10Jan 29, 2020Updated 6 years ago
- R-Ladies Dublin meetups slides and code☆12Feb 15, 2021Updated 5 years ago
- GenoCraft: A Comprehensive, User-Friendly Web Platform for High-Throughput Omics Data Analysis and Visualization (https://arxiv.org/pdf/2…☆19May 28, 2025Updated 8 months ago
- This project looks at creating a controlled vocabulary for DICOM Pt 6 Data Dictionary with a focus on CS code strings.☆12Jan 9, 2026Updated last month
- ☆11May 1, 2024Updated last year
- A small C++ library for formatted stream output of standard library objects☆10Dec 16, 2015Updated 10 years ago
- Calculate DNA methylation age using Horvath 2013 method☆11Aug 25, 2017Updated 8 years ago
- PyTorch implements `Inception-v4, Inception-ResNet and the Impact of Residual Connections on Learning` paper.☆14Aug 19, 2022Updated 3 years ago
- moddwatch watches files and directories for modifications☆18May 23, 2025Updated 8 months ago
- python codes for iDNA-ABF: multi-scale deep biological language learning model for the accurate and interpretable prediction of DNA methy…☆15May 6, 2024Updated last year
- Code to build models that effectively predict promoter-driven gene expression☆11May 15, 2025Updated 9 months ago
- VS Code Clinical Quality Language Extension☆11Updated this week
- GO GO PARSE YOUR CODE GO GO☆12Aug 27, 2025Updated 5 months ago
- Golang workshop materials☆10Mar 23, 2019Updated 6 years ago
- SecureDNA client and server components monorepo☆14Oct 20, 2025Updated 3 months ago
- ☆17May 23, 2025Updated 8 months ago
- Bayesian modelling approach for detecting RNA flexibility changes in high-throughput structure probing data under different conditions, b…☆11Dec 8, 2022Updated 3 years ago
- ~/.conf☆12Updated this week
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 5 years ago
- Python CLI for alignment-free genomics.☆12Jan 8, 2026Updated last month
- A crate for working with genomics chain files.☆12Aug 6, 2025Updated 6 months ago
- Python implementation of closed frequent subgraph mining algorithm cgSpan. Only undirected graphs are currently supported.☆13Dec 20, 2021Updated 4 years ago