Alternatives and similar repositories for GMAT

Users that are interested in GMAT are comparing it to the libraries listed below

• shuliliu / cattleGTEx
  The cattle Genotype-Tissue Expression atlas v1
  ☆28Updated 2 years ago
• hewm2008 / LDBlockShow
  LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
  ☆36Updated 6 months ago
• Menggg / BLINK
  BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions
  ☆39Updated 9 months ago
• whweve / IntAssoPlot
  ☆18Updated last year
• roberta-davidson / ADMIXTURE-smartPCA-PLINK-and-EIGENSOFT
  Scripts and notes on how to analyse ancient DNA genotype data to understand population structure
  ☆42Updated 2 years ago
• YuanmingZhang65 / IIIVmrMLM
  The R tool associated with 3VmrMLM, a comprehensive GWAS method for identifying QTNs, QTN-by-environment interactions, and QTN-by-QTN int…
  ☆34Updated last week
• johanzi / gwas_gemma
  Perform GWAS with gemma in a simple pipeline
  ☆27Updated 8 months ago
• guokai8 / CandiHap
  Build haplotye and generate figures
  ☆19Updated 2 months ago
• Crazzy-Rabbit / Rscript-to-anaylise-and-visualize
  一些用于画图的R脚本
  ☆20Updated this week
• pablobio / GALLO
  Genomic Annotation in Livestock for positional candidate LOci
  ☆13Updated 4 years ago
• yingjiexiao / maizeG2P
  ☆12Updated 4 years ago
• xukaili / CandiHap
  A haplotype analysis toolkit for natural variation study.
  ☆31Updated 2 years ago
• sunyumail93 / PipeRNAseq
  A comprehensive pipeline for RNAseq data analysis
  ☆22Updated last year
• psoerensen / qgg
  Statistical tools for Quantitative Genetic Analyses
  ☆38Updated last month
• YuetongXU / CropGBM
  ☆25Updated 5 months ago
• caulilin / QTG_Seq
  ☆22Updated 7 years ago
• pangenome / pggb-workshop
  tutorial on pggb
  ☆36Updated 11 months ago
• KosukeHamazaki / RAINBOWR
  Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)
  ☆24Updated 3 months ago
• YinLiLin / hibayes
  Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies
  ☆55Updated 4 months ago
• YaoLab-Bioinfo / binQTL
  QTL mapping with binmap data
  ☆18Updated 6 years ago
• YaoLab-Bioinfo / shinyChromosome
  an R/Shiny application for interactive creation of non-circular plots of whole genomes
  ☆45Updated 7 months ago
• TXiang-lab / blupADC
  blupADC:An useful tool for animal and plant breeding
  ☆31Updated last year
• cgrace1978 / manhplot
  Manhattan++
  ☆28Updated last year
• dongling-hub / Wild-rice-Pangenome-Project
  This repository contains all codes and scripts used in the Wild Rice Pangenome Project. The project aims to provide a comprehensive analy…
  ☆24Updated 8 months ago
• Shuhua-Group / CPC-graph-based-NGS-pipeline
  A graph-based pipeline used to call/genotype snvs/indels/SVs from NGS data
  ☆17Updated 4 months ago
• TorkamaniLab / imputation_accuracy_calculator
  ☆18Updated 4 years ago
• dcgerard / updog
  Flexible Genotyping of Polyploids using Next Generation Sequencing Data
  ☆31Updated 3 months ago
• xiaolei-lab / SIMER
  Data Simulation for Life Science and Breeding
  ☆41Updated 6 months ago
• xiaolei-lab / hiblup
  HIBLUP is an Integration of Statistical Methods Under BLUP Framework for Genomic Selection and Prediction
  ☆28Updated 4 years ago
• ACAD-UofA / Guide-to-manipulating-PLINK-EIG-and-VCF-files
  A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert be…
  ☆23Updated 2 years ago