Alternatives and similar repositories for GMAT

Users that are interested in GMAT are comparing it to the libraries listed below

• whweve / IntAssoPlot
  ☆18Updated last year
• shuliliu / cattleGTEx
  The cattle Genotype-Tissue Expression atlas v1
  ☆28Updated 2 years ago
• Shuhua-Group / CPC-graph-based-NGS-pipeline
  A graph-based pipeline used to call/genotype snvs/indels/SVs from NGS data
  ☆16Updated 3 months ago
• xihaoli / STAARpipeline-Tutorial
  The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…
  ☆32Updated last year
• YuetongXU / CropGBM
  ☆25Updated 4 months ago
• sunyumail93 / PipeRNAseq
  A comprehensive pipeline for RNAseq data analysis
  ☆22Updated last year
• KosukeHamazaki / RAINBOWR
  Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)
  ☆24Updated 2 months ago
• psoerensen / qgg
  Statistical tools for Quantitative Genetic Analyses
  ☆38Updated 2 weeks ago
• Menggg / BLINK
  BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions
  ☆38Updated 8 months ago
• cgrace1978 / manhplot
  Manhattan++
  ☆28Updated last year
• hewm2008 / LDBlockShow
  LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
  ☆35Updated 5 months ago
• YinLiLin / hibayes
  Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies
  ☆54Updated 3 months ago
• johanzi / gwas_gemma
  Perform GWAS with gemma in a simple pipeline
  ☆27Updated 7 months ago
• xihaoli / MetaSTAAR
  An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
  ☆25Updated last year
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆41Updated last year
• guokai8 / CandiHap
  Build haplotye and generate figures
  ☆18Updated last month
• roberta-davidson / ADMIXTURE-smartPCA-PLINK-and-EIGENSOFT
  Scripts and notes on how to analyse ancient DNA genotype data to understand population structure
  ☆41Updated 2 years ago
• rcc-uchicago / genetic-data-analysis-2
  RCC workshop, "Analysis of Genetic Data 2: Mapping Genome-wide Associations."
  ☆26Updated 2 years ago
• pablobio / GALLO
  Genomic Annotation in Livestock for positional candidate LOci
  ☆13Updated 4 years ago
• ACAD-UofA / Guide-to-manipulating-PLINK-EIG-and-VCF-files
  A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert be…
  ☆23Updated 2 years ago
• pangenome / pggb-workshop
  tutorial on pggb
  ☆36Updated 11 months ago
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated 2 years ago
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆52Updated 9 months ago
• hanlinqian / IntegrativeNetworkMap
  ☆23Updated 3 years ago
• xiaolei-lab / SIMER
  Data Simulation for Life Science and Breeding
  ☆41Updated 6 months ago
• filippob / introduction_to_gwas
  https://filippob.github.io/introduction_to_gwas/
  ☆21Updated 5 months ago
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 8 years ago
• DelinLi / TWAS
  Example for TWAS
  ☆12Updated 3 years ago
• TorkamaniLab / imputation_accuracy_calculator
  ☆18Updated 3 years ago
• whussain2 / Analysis-pipeline
  ☆36Updated 3 years ago