GSEA plots in ggplot2
☆10Jan 21, 2024Updated 2 years ago
Alternatives and similar repositories for gggsea
Users that are interested in gggsea are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- My extensions for Seurat package☆11Jun 26, 2020Updated 6 years ago
- scType goes spatial: ScType enables fast and accurate cell type identification from spatial transcriptomics data☆12Jul 11, 2024Updated 2 years ago
- In-silico doublet annotation for single cell RNA sequencing data☆11Jan 7, 2026Updated 9 months ago
- An R package of High-resolution Informatics Toolbox for Maldi-imaging Proteomics☆19Sep 28, 2026Updated last month
- FastCAR is an R package for Fast Correction of Ambient RNA in droplet based single cell sequencing data☆12Oct 14, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This R package for performing module repertoire analyses and generating fingerprint representations☆19Sep 16, 2021Updated 5 years ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆29Oct 1, 2022Updated 4 years ago
- De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk☆10Oct 13, 2026Updated 3 weeks ago
- Count ratio uncertainty modeling base linear regression☆16Sep 23, 2026Updated last month
- ☆19May 25, 2026Updated 5 months ago
- ChromSCape☆16Jul 30, 2025Updated last year
- MASC: Mixed-effects Association testing for Single Cells☆16Apr 16, 2021Updated 5 years ago
- SLICER algorithm for inferring cell trajectories. See details in Welch et al., Genome Biology 2016: http://genomebiology.biomedcentral.co…☆15Oct 17, 2017Updated 9 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆19Aug 2, 2018Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R interface to the Pan-human Azimuth neural network for cell type annotation☆15Jul 29, 2026Updated 3 months ago
- ☆12Mar 18, 2026Updated 7 months ago
- A end-to-end scRNA-seq analysis pipeline for cross-group comparison☆20Updated this week
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆43Nov 18, 2021Updated 4 years ago
- R scripts for NGS data visualization☆13Oct 1, 2025Updated last year
- Database-Integrated Genome Screening (DIGS) tool. Explore the dark genome using BLAST and a relational database.☆12Aug 25, 2024Updated 2 years ago
- R package for normalisation of spatial transcriptomics data☆22Oct 26, 2026Updated last week
- Topyfic: Reproducible latent dirichlet allocation (LDA) using leiden clustering and harmony for single cell epigenomics data☆13May 17, 2026Updated 5 months ago
- A slimmed down version of scran, based on the C++ library of the same name.☆10Oct 15, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Comprehensive Single-Cell Annotation and Transcriptomic Analysis Toolkit☆15Oct 8, 2026Updated 3 weeks ago
- ☆11Sep 20, 2022Updated 4 years ago
- Visium HD segmented cell-level workflow demonstration☆10Jan 22, 2026Updated 9 months ago
- An R package to create forestplots of measures of effects with their confidence intervals.☆66May 7, 2021Updated 5 years ago
- ☆10Jan 8, 2018Updated 8 years ago
- 📈A 'ggplot2' Extension for Visualizing Density, Distribution, Hazard, or Survival Functions using the 'logspline' Package☆12Jun 18, 2019Updated 7 years ago
- A ggplot extension for drawing smooth non-convex circles around a set of points.☆23May 20, 2024Updated 2 years ago
- Tao Yan's Plot Toolkit☆13Aug 20, 2019Updated 7 years ago
- ImmuCellAI (Immune Cell Abundance Identifier) is a tool to estimate the abundance of 24 immune cells from gene expression dataset includi…☆19May 25, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆19Feb 6, 2026Updated 9 months ago
- ☆16Apr 8, 2026Updated 6 months ago
- ClusterMap is an R package to analyze and compare two or more single cell expression datasets.☆22Jan 17, 2023Updated 3 years ago
- This repo consists of three themes for the ggplot2 and new colour palettes. Enjoy the new themes!☆89May 1, 2020Updated 6 years ago
- Toolbox package for organizing and working with TCGA data☆31Jul 2, 2026Updated 4 months ago
- Blood Transcription Modules for interpreting blood transcriptomics data☆11Nov 25, 2024Updated last year
- Gene-Term Enrichment Analysis (GeneTEA)☆11Jun 10, 2026Updated 4 months ago