merlebehr / treeSeg
Implementation of the treeSeg algorithm as an R package.
☆14Updated 2 years ago
Alternatives and similar repositories for treeSeg:
Users that are interested in treeSeg are comparing it to the libraries listed below
- ☆26Updated 11 months ago
- ☆17Updated 8 months ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆17Updated 4 years ago
- FREE Divergence Error-Correcting DNA Barcodes☆8Updated 6 years ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 6 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 8 months ago
- ☆19Updated 7 months ago
- A smorgasbord of R functions for population genomic analyses☆17Updated 2 months ago
- Scalable relaxed clock phylogenetic dating☆24Updated 10 months ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆13Updated 3 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 3 months ago
- Minimal Assumption Genomic Inference of Coalescence☆14Updated last year
- Color DNA/RNA bases in terminal output☆20Updated 7 years ago
- Multinomial Logistic-Normal Models (really fast)☆20Updated 3 months ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 3 years ago
- De novo VIral Genome Annotator☆21Updated 4 months ago
- ☆17Updated 7 months ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- K-mer Counting for Biological Sequence Analysis☆26Updated 5 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- Factorize metagenotypes to infer strains and their abundances☆11Updated 4 months ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆51Updated 9 years ago
- ☆27Updated last year
- Tools for analyzing trees☆14Updated last year
- [mu]tation [s]pectrum [h]istory [i]nference☆25Updated 3 weeks ago
- C++ tools for NCBI taxonomy tasks☆11Updated 3 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated last year
- TOP results by CONfident efFECT Sizes.☆14Updated last month
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 3 months ago