Implementation of the treeSeg algorithm as an R package.
☆14Feb 2, 2026Updated 8 months ago
Alternatives and similar repositories for treeSeg
Users that are interested in treeSeg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆26Jul 13, 2018Updated 8 years ago
- Coalescent Odds☆11Mar 1, 2026Updated 7 months ago
- Library of sketching functions used by PopPUNK☆29Jun 8, 2026Updated 4 months ago
- Phylogenetic Likelihood Library 2 - experimental☆12May 12, 2025Updated last year
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Aug 27, 2019Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Snakemake workflow to benchmark scRNA-seq data simulators☆15Aug 10, 2022Updated 4 years ago
- ☆10Jul 31, 2019Updated 7 years ago
- MATLAB toolbox implementing template independent component analysis☆12Sep 14, 2020Updated 6 years ago
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆67Sep 9, 2026Updated last month
- Pipeline for analysing intergenic regions in bacteria☆39Oct 25, 2019Updated 7 years ago
- Uses cDBG to count unitigs in bacterial populations☆20Feb 15, 2023Updated 3 years ago
- ☆18Feb 24, 2017Updated 9 years ago
- EM Algorithm for Model-Based Clustering of Finite Mixture Gaussian Distribution☆17Jul 27, 2026Updated 3 months ago
- A coalescent simulator for genome-scale sequences☆46Jan 2, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A DSL for layered grammar of interactive graphics in R☆23Apr 30, 2021Updated 5 years ago
- R package to implement template ICA☆11Sep 17, 2026Updated last month
- ☆18Jun 11, 2024Updated 2 years ago
- ☆12Oct 14, 2018Updated 8 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- ☆20Jul 28, 2026Updated 3 months ago
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆24Jun 2, 2021Updated 5 years ago
- Python-interface C++ library for Bayesian phylogenetics via optimization☆42Apr 8, 2024Updated 2 years ago
- Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.☆27Jan 10, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 8 years ago
- sensobol: Computation of high-order Sobol' sensitivity indices☆16Jul 20, 2026Updated 3 months ago
- ☆23Oct 9, 2026Updated 3 weeks ago
- A versatile simulation engine for stochastic population dynamics models.☆23Nov 11, 2022Updated 3 years ago
- Python implementation for investigating the reliability of ICA estimates by clustering and visualization☆19Apr 21, 2022Updated 4 years ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆99Dec 9, 2025Updated 10 months ago
- [mu]tation [s]pectrum [h]istory [i]nference☆27Aug 26, 2026Updated 2 months ago
- Counting k-mers in massive datasets☆13Nov 22, 2016Updated 9 years ago
- Underlying code for the online stats training website.☆26Aug 4, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆10Sep 2, 2026Updated last month
- ☆17Sep 17, 2025Updated last year
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Jun 17, 2022Updated 4 years ago
- depict package for drawing molecules in R☆11Mar 5, 2024Updated 2 years ago
- Reference genome quality scores☆20Dec 17, 2020Updated 5 years ago
- JSONPath for R☆12Jan 7, 2026Updated 9 months ago
- Calculates the probability of a haplotype given a population reference panel☆12Dec 9, 2024Updated last year