Implementation of the treeSeg algorithm as an R package.
☆14Feb 2, 2026Updated last month
Alternatives and similar repositories for treeSeg
Users that are interested in treeSeg are comparing it to the libraries listed below
Sorting:
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Jul 13, 2018Updated 7 years ago
- Phylogenetic Likelihood Library 2 - experimental☆11May 12, 2025Updated 9 months ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆14Aug 10, 2022Updated 3 years ago
- ☆16Sep 17, 2025Updated 5 months ago
- ☆17Mar 11, 2024Updated last year
- ☆18Jun 11, 2024Updated last year
- ☆18Feb 24, 2017Updated 9 years ago
- A versatile simulation engine for stochastic population dynamics models.☆23Nov 11, 2022Updated 3 years ago
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆21Jun 2, 2021Updated 4 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Aug 27, 2019Updated 6 years ago
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆61Oct 22, 2025Updated 4 months ago
- ☆18Oct 3, 2025Updated 4 months ago
- Reference genome quality scores☆20Dec 17, 2020Updated 5 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Jun 17, 2022Updated 3 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Jan 11, 2023Updated 3 years ago
- Library of sketching functions used by PopPUNK☆31Mar 31, 2025Updated 11 months ago
- [mu]tation [s]pectrum [h]istory [i]nference☆27Jan 9, 2025Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆32Feb 18, 2026Updated last week
- Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API☆27Oct 20, 2023Updated 2 years ago
- A single cell sequencing read simulator.☆34Oct 14, 2024Updated last year
- Benchmarking pairwise aligners☆37Feb 8, 2025Updated last year
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆38Updated this week
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Jun 6, 2023Updated 2 years ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆95Dec 9, 2025Updated 2 months ago
- alignment to variation graph inducer☆157Jan 20, 2026Updated last month
- Calculate distances between phylogenetic trees in R☆35Feb 19, 2026Updated last week
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated last year
- Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees☆12Sep 6, 2023Updated 2 years ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 12 years ago
- For live demo, see http://lh3lh3.users.sourceforge.net/bioseq.shtml☆39Aug 8, 2019Updated 6 years ago
- Calculates the probability of a haplotype given a population reference panel☆12Dec 9, 2024Updated last year
- ☆11Feb 11, 2021Updated 5 years ago
- Supporting information of 'Single-cell RNA sequencing of a European and an African lymphoblastoid cell line'☆10Feb 27, 2020Updated 6 years ago
- pliman R package☆18Feb 16, 2026Updated 2 weeks ago
- A variational autoencoder-based approach for copy number variation inference using single-cell transcriptomics☆11Mar 11, 2024Updated last year
- LaTeX template of graduate Thesis [University of Chinese Academy of Sciences]☆12Nov 7, 2017Updated 8 years ago
- Functions for handling RNA-seq files and formats as input and output for scrattch functions.☆11Aug 20, 2025Updated 6 months ago
- A coalescent simulator for genome-scale sequences☆44Jan 2, 2024Updated 2 years ago