Alternatives and similar repositories for treeSeg

Users that are interested in treeSeg are comparing it to the libraries listed below

• reptalex / phylofactor
  ☆27Updated last year
• emvolz-phylodynamics / treestructure
  ☆17Updated 3 weeks ago
• kkdey / Logolas
  R package for Enrichment Depletion Logos (EDLogos) and String Logos
  ☆27Updated 6 years ago
• pachterlab / metakallisto
  Using kallisto for metagenomic analysis
  ☆50Updated 8 years ago
• j-a-thia / genomalicious
  A smorgasbord of R functions for population genomic analyses
  ☆18Updated this week
• finkelsteinlab / freebarcodes
  FREE Divergence Error-Correcting DNA Barcodes
  ☆9Updated 7 years ago
• duchene / phylomad
  ☆19Updated last year
• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆25Updated last year
• jgolob / maliampi
  Maximum Likelihood Amplicon Pipeline
  ☆22Updated last year
• weissmanlab / magic
  Minimal Assumption Genomic Inference of Coalescence
  ☆14Updated last year
• ruolin / strawberry
  A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)
  ☆23Updated 4 years ago
• Transipedia / dekupl
  Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.
  ☆15Updated 6 years ago
• akiomiyao / tif
  Transposon Insertion Finder - Detection of new TE insertions in NGS data
  ☆20Updated last month
• ggloor / ALDEx_bioc
  ALDEx_bioc is the working directory for updating bioconductor
  ☆28Updated 2 months ago
• salmonteam / SalmonBlogResponse
  Response to blog post about Salmon
  ☆37Updated 7 years ago
• DormanLab / AmpliCI
  AmpliCI, a model-based algorithm for denoising Illumina amplicon data.
  ☆23Updated 2 months ago
• sa-lee / starmie
  starmie: plotting and inference for population structure models
  ☆13Updated 6 years ago
• danlwarren / RWTY
  R We There Yet?
  ☆31Updated 3 months ago
• jengelmann / FastqPuri
  fastq quality assessment and filtering tool
  ☆18Updated 2 years ago
• mdkarcher / phylodyn
  ☆18Updated 3 years ago
• harrispopgen / mushi
  [mu]tation [s]pectrum [h]istory [i]nference
  ☆26Updated 6 months ago
• drostlab / myTAI
  Evolutionary Transcriptomics with R
  ☆44Updated last week
• COMBINE-lab / shoal
  Improved multi-sample transcript abundance estimates using adaptive priors
  ☆20Updated 6 years ago
• ansariazim / treeBreaker
  Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree
  ☆25Updated 7 years ago
• alevar / tiebrush
  Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)
  ☆17Updated last month
• ngs-docs / 2015-nov-adv-rna
  ☆18Updated 9 years ago
• karel-brinda / samsift
  SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.
  ☆23Updated 7 years ago
• gschofl / reutils
  Talk to the NCBI EUtils
  ☆22Updated 4 years ago
• luntergroup / smcsmc
  Demographic inference from whole genomes
  ☆13Updated 2 years ago
• mcveanlab / treeseq-inference
  Work for the tree sequence inference paper.
  ☆23Updated 4 years ago