Alternatives and similar repositories for treeSeg

Users that are interested in treeSeg are comparing it to the libraries listed below

• emvolz-phylodynamics / treestructure
  ☆17Updated this week
• reptalex / phylofactor
  ☆27Updated last year
• duchene / phylomad
  ☆19Updated 11 months ago
• markrobinsonuzh / TreeSummarizedExperiment
  An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension
  ☆13Updated 2 months ago
• finkelsteinlab / freebarcodes
  FREE Divergence Error-Correcting DNA Barcodes
  ☆8Updated 6 years ago
• kkdey / Logolas
  R package for Enrichment Depletion Logos (EDLogos) and String Logos
  ☆27Updated 6 years ago
• ansariazim / treeBreaker
  Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree
  ☆25Updated 6 years ago
• shaunpwilkinson / kmer
  K-mer Counting for Biological Sequence Analysis
  ☆27Updated 6 years ago
• mcveanlab / treeseq-inference
  Work for the tree sequence inference paper.
  ☆23Updated 4 years ago
• 4ment / phylostan
  Phylogenetic inference using Stan
  ☆24Updated 3 months ago
• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆25Updated last year
• j-a-thia / genomalicious
  A smorgasbord of R functions for population genomic analyses
  ☆18Updated last week
• ruolin / strawberry
  A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)
  ☆23Updated 4 years ago
• ngs-docs / 2015-nov-adv-rna
  ☆18Updated 9 years ago
• alevar / tiebrush
  Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)
  ☆17Updated 2 months ago
• harrispopgen / mushi
  [mu]tation [s]pectrum [h]istory [i]nference
  ☆25Updated 4 months ago
• ggloor / ALDEx_bioc
  ALDEx_bioc is the working directory for updating bioconductor
  ☆28Updated last month
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 6 years ago
• weissmanlab / magic
  Minimal Assumption Genomic Inference of Coalescence
  ☆14Updated last year
• jgolob / maliampi
  Maximum Likelihood Amplicon Pipeline
  ☆22Updated last year
• koelling / dnacol
  Color DNA/RNA bases in terminal output
  ☆21Updated 7 years ago
• bsmith89 / StrainFacts
  Factorize metagenotypes to infer strains and their abundances
  ☆12Updated 8 months ago
• alvinxhan / PhyCLIP
  Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)
  ☆19Updated 4 years ago
• csoneson / treeclimbR
  ☆20Updated last month
• Transipedia / dekupl
  Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.
  ☆15Updated 6 years ago
• dhelekal / CaveDive
  ☆17Updated 11 months ago
• lh3 / pre-pe
  Preprocessing paired-end reads produced with experiment-specific protocols
  ☆32Updated 6 years ago
• COMBINE-lab / shoal
  Improved multi-sample transcript abundance estimates using adaptive priors
  ☆20Updated 6 years ago
• sandberg-lab / Spreading-Correction
  Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).
  ☆15Updated 4 years ago
• mreppell / Karp
  Accurate and fast taxonomic classification using pseudoaligning
  ☆21Updated 7 years ago