xflouris / libpllLinks
Phylogenetic Likelihood Library
☆29Updated 4 years ago
Alternatives and similar repositories for libpll
Users that are interested in libpll are comparing it to the libraries listed below
Sorting:
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- Estimating k-mer coverage histogram of genomics data☆77Updated last year
- ☆16Updated 7 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- REINDEER REad Index for abuNDancE quERy☆57Updated last month
- deploy a snakemake pipeline directly from version control (under development)☆24Updated 2 weeks ago
- Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI☆50Updated 5 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Infer a tree sequence from genetic variation data.☆59Updated 3 weeks ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 3 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆45Updated last month
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API☆28Updated last year
- Histosketching Using Little Kmers☆57Updated 2 years ago
- Response to blog post about Salmon☆37Updated 7 years ago
- ☆14Updated 2 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- distance based phylogenetic placement☆27Updated last year
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆56Updated 10 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- my PhD thesis☆36Updated 6 years ago
- Components of genome sequence assembly tools☆22Updated 3 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆47Updated last year
- De novo estimates of genetic relatedness from next-gen sequencing data☆45Updated 6 years ago
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago