Phylogenetic Likelihood Library
☆29Dec 3, 2020Updated 5 years ago
Alternatives and similar repositories for libpll
Users that are interested in libpll are comparing it to the libraries listed below
Sorting:
- DCN stomata prediction on epidermal images☆11Dec 8, 2022Updated 3 years ago
- Divide and Conquer BLAST: using grid engines to accelerate NCBI-BLAST+ and other sequence analysis tools☆11Apr 26, 2020Updated 5 years ago
- Phylogenetic Likelihood Library 2 - experimental☆11May 12, 2025Updated 9 months ago
- Command Line Interface for Genomes on a Tree.☆12Apr 30, 2025Updated 10 months ago
- A tool used to cut adapter / qc / trimming / split / statistics for fastq data, it was developed in C.☆10Apr 9, 2018Updated 7 years ago
- A robust and fast clustering method for amplicon-based studies☆144Nov 8, 2025Updated 3 months ago
- Possvm: find clusters of orthologs in phylogenies using species overlap & MCL☆16Jul 19, 2024Updated last year
- Heuristic, parsimony-based ancestral recombination graph inference☆17Aug 25, 2021Updated 4 years ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Apr 20, 2020Updated 5 years ago
- Bioinformatic Tools for analyzing targeted amplicon sequencing developed by Nicholas Hathaway of Bailey Lab☆17Dec 16, 2025Updated 2 months ago
- Clann: constructing consensus trees and supertrees from multiple source trees☆18Mar 23, 2025Updated 11 months ago
- Lightweight python library for predicting the difficulty of alignments in phylogenetics☆21Dec 6, 2025Updated 2 months ago
- Pathogenicity prediction of bacterial genomes☆17Jun 27, 2018Updated 7 years ago
- ☆15Apr 19, 2018Updated 7 years ago
- ☆17Jan 5, 2021Updated 5 years ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 5 years ago
- MPBoot: Fast phylogenetic maximum parsimony tree inference and bootstrap approximation☆21Dec 4, 2024Updated last year
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Aug 27, 2019Updated 6 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.☆45Nov 25, 2022Updated 3 years ago
- ContScout sequence contamination filter tool☆26Dec 28, 2025Updated 2 months ago
- NVBIO is a library of reusable components designed to accelerate bioinformatics applications using CUDA.☆57Aug 21, 2014Updated 11 years ago
- Identify short variants and structural variants from raw sequencing data or genomic sequences☆34Mar 27, 2024Updated last year
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Jun 17, 2022Updated 3 years ago
- A Python library for fast, thread-safe computations on phylogenetic trees☆29Feb 19, 2026Updated last week
- A more efficient quality control tool for sequencing data☆33May 27, 2025Updated 9 months ago
- Poisot Lab Manuscript Template☆26May 14, 2018Updated 7 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- A C++14 library for NGS data formats☆39Aug 5, 2019Updated 6 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆33Jun 1, 2022Updated 3 years ago
- ☆24Apr 2, 2021Updated 4 years ago
- Computer simulator of multiplex tissue images from a set of user-defined parameters☆10Dec 13, 2022Updated 3 years ago
- Efficient base quality score recalibrator for NGS data☆24Nov 28, 2015Updated 10 years ago
- Machine Learning Workshop Resources☆12Feb 16, 2019Updated 7 years ago
- StriDe Assembler☆25Nov 23, 2017Updated 8 years ago
- ☆12Oct 29, 2025Updated 4 months ago
- phylogenetics tools for linux (and other mostly posix compliant) computers☆122Jan 17, 2025Updated last year
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Apr 14, 2025Updated 10 months ago
- MONI: A Pangenomic Index for Finding MEMs☆37Mar 25, 2025Updated 11 months ago