Alternatives and similar repositories for libpll

Users that are interested in libpll are comparing it to the libraries listed below

• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆46Updated 7 years ago
• brentp / tiwih
  simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
  ☆44Updated 2 years ago
• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆77Updated 2 years ago
• Transipedia / dekupl
  Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.
  ☆15Updated 7 years ago
• tskit-dev / tsinfer
  Infer a tree sequence from genetic variation data.
  ☆59Updated 3 months ago
• blaxterlab / blobology
  Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …
  ☆47Updated 3 years ago
• arq5x / grabix
  a wee tool for random access into BGZF files.
  ☆86Updated 7 years ago
• xa6xa6 / metaOthello
  ☆15Updated 7 years ago
• ekg / bamaddrg
  adds sample names and read-group (RG) tags to BAM alignments
  ☆51Updated 5 years ago
• PoonLab / covizu
  Rapid analysis and visualization of coronavirus genome variation
  ☆48Updated 2 weeks ago
• kamimrcht / REINDEER
  REINDEER REad Index for abuNDancE quERy
  ☆56Updated 7 months ago
• Snakemake-Profiles / doc
  Documentation of the Snakemake-Profiles project.
  ☆55Updated 3 years ago
• dkoslicki / MetaPalette
  Metagenomic profiling and phylogenetic distances via common kmers
  ☆42Updated 4 years ago
• epruesse / ymp
  Flexible omics pipeline
  ☆17Updated 3 months ago
• mdrasmus / argweaver
  Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)
  ☆58Updated 10 years ago
• seandavi / GFFutils
  Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach
  ☆36Updated 15 years ago
• stamatak / ExaML
  Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI
  ☆50Updated 5 years ago
• ekg / thesis
  my PhD thesis
  ☆36Updated 6 years ago
• pachterlab / metakallisto
  Using kallisto for metagenomic analysis
  ☆49Updated 9 years ago
• sestaton / Transposome
  A toolkit for annotation of transposable element families from unassembled sequence reads
  ☆31Updated last month
• sanger-pathogens / gff3toembl
  Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
  ☆29Updated 7 years ago
• vsbuffalo / snakemake-tutorial
  Snakemake tutorial materials
  ☆19Updated 5 years ago
• bioinformatics-centre / BayesTyper
  A method for variant graph genotyping based on exact alignment of k-mers
  ☆87Updated 6 years ago
• rambaut / Seq-Gen
  Sequence simulator
  ☆55Updated last year
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆35Updated 6 years ago
• tlawrence3 / FAST
  FAST: Fast Analysis of Sequences Toolbox
  ☆31Updated 6 years ago
• merlebehr / treeSeg
  Implementation of the treeSeg algorithm as an R package.
  ☆14Updated last week
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆44Updated 3 months ago
• kdm9 / axe
  Rapid competitive read demulitplexer. Made with tries.
  ☆23Updated 8 months ago
• jts / nanopore-paper-analysis
  Code for nanopore paper
  ☆33Updated 10 years ago