xflouris / libpllLinks
Phylogenetic Likelihood Library
☆29Updated 4 years ago
Alternatives and similar repositories for libpll
Users that are interested in libpll are comparing it to the libraries listed below
Sorting:
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆56Updated 9 years ago
- Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API☆28Updated last year
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆33Updated last month
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- Small general purpose library for C and Python with focus on bioinformatics.☆30Updated 2 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI☆50Updated 5 years ago
- Flexible omics pipeline☆18Updated last month
- Reference genome quality scores☆21Updated 4 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated last month
- Work for the tree sequence inference paper.☆23Updated 4 years ago
- dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organ…☆21Updated 5 months ago
- REINDEER REad Index for abuNDancE quERy☆58Updated 11 months ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆33Updated last year
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆26Updated last year
- Guide to transcriptome assembly & analysis☆21Updated 8 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- ☆11Updated 4 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Updated 5 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated last week
- genotype dimensionality reduction with a VAE☆45Updated 3 months ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 3 years ago
- GATB Minia assembly pipeline☆30Updated 2 years ago
- Hitting associations with k-mers☆45Updated 3 years ago