A versatile simulation engine for stochastic population dynamics models.
☆23Nov 11, 2022Updated 3 years ago
Alternatives and similar repositories for MASTER
Users that are interested in MASTER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Utilities and distributions for (birth-death) skyline models.☆10Aug 27, 2019Updated 6 years ago
- LinguaPhylo: A language for describing, visualising and simulating probabilistic phylogenetic models☆22Aug 4, 2026Updated last week
- VGsim is a fast and scalable simulator of viral genealogies during global pandemic.☆17Apr 18, 2026Updated 3 months ago
- ☆12Jul 20, 2026Updated 3 weeks ago
- PhyDyn: Epidemiological modelling in BEAST☆21Dec 22, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- BioDSL (pronounced Biodiesel) is a Domain Specific Language for creating bioinformatic analysis workflows.☆16Jul 30, 2018Updated 8 years ago
- ☆22Updated this week
- BEAST 2 package which provides support for multi-type trees: phylogenetic trees on structured populations.☆22Aug 11, 2025Updated last year
- Inference of putative transmission phylogenetic clusters☆12Oct 13, 2020Updated 5 years ago
- Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees☆12Sep 6, 2023Updated 2 years ago
- CellCoal: coalescent simulation of single-cell NGS genotypes☆15Feb 10, 2025Updated last year
- ☆12May 12, 2019Updated 7 years ago
- An R package for the analysis of infectious disease transmission data☆10Nov 8, 2021Updated 4 years ago
- Bacterial phylogenetics in BEAST 2.☆18Mar 30, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Scalable relaxed clock phylogenetic dating☆29Jul 5, 2026Updated last month
- Linear-time rooting of phylogenetic trees☆18Jun 12, 2023Updated 3 years ago
- Phylogenetic inference using Stan☆24Mar 6, 2025Updated last year
- ☆10Dec 20, 2022Updated 3 years ago
- A coalescent simulator for genome-scale sequences☆46Jan 2, 2024Updated 2 years ago
- Support EMCRs to develop their computing skills☆13Jun 21, 2026Updated last month
- Phylogenetic Likelihood Library 2 - experimental☆11May 12, 2025Updated last year
- Coalescent simulation and likelihood for phylodynamic inference☆16May 15, 2025Updated last year
- Generate phylogenetic datasets with minimal setup effort☆16Jun 2, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PhyloDeep is a python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.☆30Jul 21, 2026Updated 3 weeks ago
- babette is an R package to work with BEAST2☆46Jul 16, 2026Updated 3 weeks ago
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆14Dec 8, 2025Updated 8 months ago
- Analysis of global migration patterns of seasonal influenza viruses☆22Jul 24, 2019Updated 7 years ago
- Bayesian Evolutionary Analysis by Sampling Trees☆280Jul 13, 2026Updated 3 weeks ago
- ☆18Jun 11, 2024Updated 2 years ago
- Phylodynamic estimation of nCoV incidence and prevalence☆19Feb 14, 2020Updated 6 years ago
- ☆14Apr 14, 2026Updated 3 months ago
- Phylogenetic trees in Julia☆21Sep 1, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Source and supplementary information for Dota Under Lords paper☆17Sep 8, 2021Updated 4 years ago
- Eyes on your (genomic) data☆37Dec 10, 2022Updated 3 years ago
- An R API to the Oxford COVID-19 Database☆12May 7, 2021Updated 5 years ago
- I do not have time to maintain this anymore! It remains as a sandbox/playground :)☆11May 13, 2024Updated 2 years ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆46Updated this week
- Materials for the "Version control for research" breakout session of the Best Practice for Code Archiving workshop, 11 December 2016.☆14Dec 10, 2016Updated 9 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago