tgvaughan / MASTERLinks
A versatile simulation engine for stochastic population dynamics models.
☆22Updated 2 years ago
Alternatives and similar repositories for MASTER
Users that are interested in MASTER are comparing it to the libraries listed below
Sorting:
- Reconstruction of transmission trees using genomic data☆63Updated last year
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 2 months ago
- Scalable relaxed clock phylogenetic dating☆25Updated last month
- A phylogeny dating method using least-squares algorithms and criteria☆28Updated 10 months ago
- ☆18Updated last month
- R We There Yet?☆31Updated 5 months ago
- Phylogenetics between and within hosts at once, all along the genome.☆50Updated 11 months ago
- Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"☆21Updated 4 months ago
- Rapid analysis and visualization of coronavirus genome variation☆48Updated 3 weeks ago
- ☆17Updated 5 months ago
- Sequence simulator☆54Updated 6 months ago
- Bacterial phylogenetics in BEAST 2.☆17Updated 2 years ago
- ☆11Updated 6 months ago
- ☆26Updated 4 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆16Updated 2 years ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆35Updated last week
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆65Updated 2 years ago
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al., in prep.)☆34Updated this week
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆31Updated 2 months ago
- Estimating time trees from very large phylogenies☆27Updated last year
- Phylodynamic inference☆18Updated 5 years ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆39Updated last month
- Phylogenetic inference using Stan☆23Updated 5 months ago
- Inference of microbial interaction networks from large-scale heterogeneous abundance data☆87Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- A toolkit for analyzing and visualizing phylogenetic placement data☆63Updated 6 months ago
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆12Updated 7 years ago
- Tool for quick offline batch conversion of Genbank IDs or accessions to taxonomy strings☆14Updated last year
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆35Updated 3 months ago
- ☆74Updated last year