A versatile simulation engine for stochastic population dynamics models.
☆23Nov 11, 2022Updated 3 years ago
Alternatives and similar repositories for MASTER
Users that are interested in MASTER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Utilities and distributions for (birth-death) skyline models.☆10Aug 27, 2019Updated 6 years ago
- Espalier is a Python package for working with discordant phylogenetic trees using maximum agreement forests.☆14Jun 8, 2026Updated 3 weeks ago
- LinguaPhylo: A language for describing, visualising and simulating probabilistic phylogenetic models☆21Jun 17, 2026Updated 2 weeks ago
- VGsim is a fast and scalable simulator of viral genealogies during global pandemic.☆17Apr 18, 2026Updated 2 months ago
- ☆12Feb 9, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- PhyDyn: Epidemiological modelling in BEAST☆21Dec 22, 2022Updated 3 years ago
- BioDSL (pronounced Biodiesel) is a Domain Specific Language for creating bioinformatic analysis workflows.☆16Jul 30, 2018Updated 7 years ago
- Inference of putative transmission phylogenetic clusters☆12Oct 13, 2020Updated 5 years ago
- Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees☆12Sep 6, 2023Updated 2 years ago
- Implementation of the treeSeg algorithm as an R package.☆14Feb 2, 2026Updated 4 months ago
- BEAST 2 package which provides support for multi-type trees: phylogenetic trees on structured populations.☆22Aug 11, 2025Updated 10 months ago
- An R package for the analysis of infectious disease transmission data☆10Nov 8, 2021Updated 4 years ago
- CellCoal: coalescent simulation of single-cell NGS genotypes☆15Feb 10, 2025Updated last year
- Scalable relaxed clock phylogenetic dating☆28Sep 3, 2025Updated 9 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Bacterial phylogenetics in BEAST 2.☆18Mar 30, 2023Updated 3 years ago
- Linear-time rooting of phylogenetic trees☆18Jun 12, 2023Updated 3 years ago
- ☆12May 12, 2019Updated 7 years ago
- Phylogenetic inference using Stan☆24Mar 6, 2025Updated last year
- ☆10Dec 20, 2022Updated 3 years ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆33Oct 25, 2013Updated 12 years ago
- A coalescent simulator for genome-scale sequences☆46Jan 2, 2024Updated 2 years ago
- Phylogenetic Likelihood Library 2 - experimental☆11May 12, 2025Updated last year
- Coalescent simulation and likelihood for phylodynamic inference☆15May 15, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Dec 8, 2025Updated 6 months ago
- babette is an R package to work with BEAST2☆46Mar 13, 2026Updated 3 months ago
- Plasmid analysis using rearrangement distances☆56May 28, 2026Updated last month
- Analysis of global migration patterns of seasonal influenza viruses☆22Jul 24, 2019Updated 6 years ago
- ☆18Jun 11, 2024Updated 2 years ago
- PhyloDeep is a python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.☆30Oct 9, 2024Updated last year
- Support EMCRs to develop their computing skills☆13Jun 21, 2026Updated last week
- Rapid & standardized genome annotation using protein structural information☆68Jun 25, 2026Updated last week
- Phylodynamic estimation of nCoV incidence and prevalence☆19Feb 14, 2020Updated 6 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆14Apr 14, 2026Updated 2 months ago
- Phylogenetic trees in Julia☆21Sep 1, 2021Updated 4 years ago
- Eyes on your (genomic) data☆37Dec 10, 2022Updated 3 years ago
- An R API to the Oxford COVID-19 Database☆12May 7, 2021Updated 5 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆36Jun 1, 2026Updated last month
- I do not have time to maintain this anymore! It remains as a sandbox/playground :)☆11May 13, 2024Updated 2 years ago
- Materials for the "Version control for research" breakout session of the Best Practice for Code Archiving workshop, 11 December 2016.☆14Dec 10, 2016Updated 9 years ago