tgvaughan / MASTER
A versatile simulation engine for stochastic population dynamics models.
☆22Updated 2 years ago
Alternatives and similar repositories for MASTER:
Users that are interested in MASTER are comparing it to the libraries listed below
- Reconstruction of transmission trees using genomic data☆61Updated last year
- R We There Yet?☆30Updated 2 years ago
- Scalable relaxed clock phylogenetic dating☆24Updated 10 months ago
- ☆17Updated 9 months ago
- Bacterial phylogenetics in BEAST 2.☆17Updated last year
- Phylodynamic inference☆18Updated 4 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆14Updated last year
- Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"☆14Updated last week
- R package for studying environmental rasters and phylogenetic informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al.…☆30Updated this week
- ☆11Updated last week
- ☆19Updated 8 months ago
- ☆16Updated 3 weeks ago
- Estimating time trees from very large phylogenies☆26Updated 7 months ago
- Phylogenetic inference using Stan☆23Updated last year
- Tutorial on Bayesian phylogenetic analysis☆45Updated 7 years ago
- An R-wrapper for lsd2☆9Updated last year
- A set of scripts for calculating pairwise SNP distance☆38Updated 2 years ago
- ☆26Updated 3 years ago
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆20Updated 3 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆35Updated 2 months ago
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆60Updated 2 years ago
- ☆12Updated 5 years ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆86Updated 4 months ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 6 years ago
- Phylogenetics between and within hosts at once, all along the genome.☆48Updated 4 months ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Updated 6 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆48Updated 2 years ago
- Inferring global and local strict molecular clocks using root-to-tip regression☆11Updated 7 months ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆30Updated 3 weeks ago
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆32Updated last month