moshi4 / phyTreeViz
Simple phylogenetic tree visualization python package for phylogenetic analysis
☆48Updated 7 months ago
Alternatives and similar repositories for phyTreeViz:
Users that are interested in phyTreeViz are comparing it to the libraries listed below
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆55Updated last week
- PHANOTATE: a tool to annotate phage genomes.☆73Updated 4 months ago
- a python package for automated generation of phylogenetic trees from genbank files☆21Updated last month
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆47Updated 2 months ago
- ☆69Updated last month
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- ☆38Updated last week
- ☆27Updated 3 months ago
- CLI tool to annotate genes with KOfam☆78Updated last year
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆44Updated 8 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆33Updated last month
- Pipeline for major biological analyses.☆34Updated 3 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 2 weeks ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆67Updated 3 months ago
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆32Updated last year
- Python tool to reduce size and redundancy of phylogenetic datasets☆35Updated last year
- A workflow and scripts for large-scale antiSMASH analyses☆39Updated last week
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆76Updated 7 months ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Bioinformatics tool for Locus Visualisation☆96Updated last month
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆61Updated 4 months ago
- FastOMA is a scalable software package to infer orthology relationship.☆74Updated last week
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆62Updated 7 months ago
- A package to annotate protein sequences☆56Updated last month
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆18Updated last month
- A toolkit for prokaryotic comparative genomics☆47Updated 2 months ago
- UFCG: Universal Fungal Core Genes☆32Updated 2 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆41Updated 3 months ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆58Updated 3 months ago