Stephane-S / Simplot_PlusPlusLinks
☆34Updated last year
Alternatives and similar repositories for Simplot_PlusPlus
Users that are interested in Simplot_PlusPlus are comparing it to the libraries listed below
Sorting:
- A program for detection of tRNA genes☆60Updated 2 years ago
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆34Updated 6 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆48Updated 3 weeks ago
- CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆44Updated 10 months ago
- A toolkit for prokaryotic comparative genomics☆49Updated 4 months ago
- Influenza genome analysis Nextflow workflow☆26Updated last month
- ☆30Updated 5 months ago
- SHOOT.bio - the phylogenetic search engine☆24Updated 2 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆35Updated 3 months ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆66Updated 5 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆30Updated 10 months ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Updated 3 years ago
- UFCG: Universal Fungal Core Genes☆33Updated 4 months ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆49Updated 4 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆53Updated last month
- Python tool to reduce size and redundancy of phylogenetic datasets☆41Updated 2 years ago
- Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes☆21Updated 3 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆46Updated 5 months ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆36Updated this week
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆27Updated last year
- Eukaryotic genome annotation software.☆18Updated last week
- Pangenome analysis of eukaryotes.☆18Updated 4 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- An R package designed for drawing gene arrow maps☆79Updated last month
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆50Updated 6 months ago
- a python package for automated generation of phylogenetic trees from genbank files☆22Updated 2 months ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- ☆71Updated last month