☆40Oct 2, 2023Updated 2 years ago
Alternatives and similar repositories for Simplot_PlusPlus
Users that are interested in Simplot_PlusPlus are comparing it to the libraries listed below
Sorting:
- FRACTAL: framework for distributed computing to trace large accurate lineages☆24Sep 6, 2022Updated 3 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated last year
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Aug 12, 2024Updated last year
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated last year
- ☆12Nov 23, 2020Updated 5 years ago
- ☆12Dec 7, 2020Updated 5 years ago
- Taxonomic classification of viruses at Order and Family level☆21Mar 1, 2023Updated 2 years ago
- ☆18Nov 7, 2024Updated last year
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆14Nov 1, 2024Updated last year
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆17Jul 28, 2025Updated 6 months ago
- Influenza genome analysis Nextflow workflow☆31Sep 15, 2025Updated 5 months ago
- i-ADHoRe is a highly sensitive software tool to detect degenerated homology relations within and between different genomes.☆17Jun 28, 2024Updated last year
- Detection and classification selective sweep use domain adaptive model☆10Apr 29, 2024Updated last year
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- ☆17May 26, 2022Updated 3 years ago
- ☆30Sep 21, 2023Updated 2 years ago
- Phylogenetic Network Inference without ILS☆19Jul 31, 2022Updated 3 years ago
- A richly featured desktop platform for data analysis of bioinformatics. Especially, for quick sequence annotation and mutation analysis o…☆34Nov 6, 2024Updated last year
- ☆10May 31, 2022Updated 3 years ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆17May 26, 2025Updated 9 months ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Jul 9, 2021Updated 4 years ago
- ☆20Nov 18, 2021Updated 4 years ago
- Umbrella documentation project for Nextstrain☆18Updated this week
- ☆18May 19, 2022Updated 3 years ago
- A tool to detect structural variant☆17Mar 27, 2023Updated 2 years ago
- Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files☆121Updated this week
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆27Dec 16, 2021Updated 4 years ago
- plot genome alignment synteny☆21May 25, 2020Updated 5 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆11Aug 2, 2023Updated 2 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 10 months ago
- Graphical Representation of Ancestral Sequence Predictions☆12Mar 6, 2023Updated 2 years ago
- Detecting recombination of viral lineages☆11Dec 23, 2025Updated 2 months ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆19Feb 3, 2021Updated 5 years ago
- R Package for phasing of single cell Strand-seq data☆10Jan 14, 2025Updated last year
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 2 years ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11May 19, 2020Updated 5 years ago
- VIPER (Variant InsPector and Expert Rating tool) can be utilised to view variant calls and decide whether or not those are true or false …☆16Jan 17, 2022Updated 4 years ago
- Alignment-Free methods Adjusted by Neural Network☆13Feb 20, 2020Updated 6 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 8, 2025Updated 7 months ago