A genome browser in your Jupyter notebook
☆31Mar 13, 2026Updated 6 months ago
Alternatives and similar repositories for genomenotebook
Users that are interested in genomenotebook are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Identifying ViRal and Circular content in metAgenomes☆14Dec 13, 2018Updated 7 years ago
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated 2 years ago
- Reference-free variant discovery in large eukaryotic genomes☆42Jul 13, 2021Updated 5 years ago
- A database for signatures of public genomic sources☆18Jul 18, 2026Updated 2 months ago
- Ancestral Sequence Reconstruction in Python☆15May 9, 2019Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- kMetaShot is an alignment-free taxonomic classifier based on k-mer/minimizer counting for MAGs☆12Apr 27, 2026Updated 4 months ago
- Origin of Chromosomal Replication Assessment. Python tool for the analysis of circular bacterial DNA sequences in order to find their ori…☆18Oct 10, 2025Updated 11 months ago
- Chimera: A Versatile Metagenomic Classification Tool☆21Aug 16, 2026Updated last month
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆24Jul 11, 2026Updated 2 months ago
- A simple IPython/Jupyter cell magic command to display name and version of imported modules.☆16Aug 27, 2017Updated 9 years ago
- The CRISPR assembler☆35May 13, 2021Updated 5 years ago
- Iterative masking algorithm on MSA Transformer to generate synthetic sequences☆30Jan 17, 2024Updated 2 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 9 years ago
- sunburst plots for taxonomy - working to update Krona☆48Sep 22, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Population analysis PIPEline 🛠🧬☆28Mar 2, 2026Updated 6 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆41Aug 7, 2026Updated last month
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆25Mar 7, 2026Updated 6 months ago
- ☆17Mar 21, 2023Updated 3 years ago
- A Python interface to gb-io, a fast GenBank parser written in Rust.☆25May 21, 2026Updated 3 months ago
- Searching large collections of sequencing data with genome-scale queries☆21Updated this week
- Index kmtricks bf matrices☆49Aug 25, 2026Updated 3 weeks ago
- strain-level analysis tools☆41Oct 21, 2024Updated last year
- Tool for quick offline batch conversion of Genbank IDs or accessions to taxonomy strings☆15Jan 8, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- Functional Analysis of Metagenomes by Likelihood Inference☆17Sep 8, 2025Updated last year
- A selection of short scripts for analyzing microbial genomes☆14Jun 26, 2018Updated 8 years ago
- Detect contigs of complete circular genomes☆23Jun 6, 2019Updated 7 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Mar 28, 2017Updated 9 years ago
- ☆22Sep 4, 2024Updated 2 years ago
- A toolbox for pangenome analysis and threshold evaluation.☆102Jul 8, 2022Updated 4 years ago
- Visualize microbial evolution at the SNP level!☆17Aug 12, 2025Updated last year
- A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.☆16Jul 25, 2016Updated 10 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Bifrost graph gene caller.☆101Aug 31, 2026Updated 2 weeks ago
- ☆25Feb 7, 2022Updated 4 years ago
- Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab☆11Aug 29, 2026Updated 3 weeks ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆39Feb 1, 2023Updated 3 years ago
- Analysis of the population diversity of SARS-CoV-2 within and between individual patients☆15Apr 30, 2020Updated 6 years ago
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 2 months ago
- Overview of our data for microbial genomic benchmarking☆41Jun 19, 2026Updated 3 months ago