A genome browser in your Jupyter notebook
☆31Mar 13, 2026Updated 2 weeks ago
Alternatives and similar repositories for genomenotebook
Users that are interested in genomenotebook are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Identifying ViRal and Circular content in metAgenomes☆14Dec 13, 2018Updated 7 years ago
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated last year
- Reference-free variant discovery in large eukaryotic genomes☆42Jul 13, 2021Updated 4 years ago
- A database for signatures of public genomic sources☆18Jan 1, 2026Updated 2 months ago
- Ancestral Sequence Reconstruction in Python☆14May 9, 2019Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Searching large collections of sequencing data with genome-scale queries☆17Feb 5, 2026Updated last month
- Origin of Chromosomal Replication Assessment. Python tool for the analysis of circular bacterial DNA sequences in order to find their ori…☆18Oct 10, 2025Updated 5 months ago
- Iterative masking algorithm on MSA Transformer to generate synthetic sequences☆29Jan 17, 2024Updated 2 years ago
- kMetaShot is an alignment-free taxonomic classifier based on k-mer/minimizer counting for MAGs☆11Mar 20, 2026Updated last week
- Chimera: A Versatile Metagenomic Classification Tool☆21Feb 1, 2026Updated last month
- The CRISPR assembler☆34May 13, 2021Updated 4 years ago
- Using Biopython's Bio.Entrez package to Access NCBI Entrez databases☆16Jun 26, 2014Updated 11 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 8 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Mar 7, 2025Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Discovery of conserved gene clusters in multiple genomes☆127Jan 16, 2026Updated 2 months ago
- Pandas-based Data Handler for VCF, BED, and SAM Files☆32Oct 22, 2021Updated 4 years ago
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆24Mar 7, 2026Updated 3 weeks ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆21Dec 9, 2025Updated 3 months ago
- ☆17Mar 21, 2023Updated 3 years ago
- A simple IPython/Jupyter cell magic command to display name and version of imported modules.☆16Aug 27, 2017Updated 8 years ago
- A Python interface to gb-io, a fast GenBank parser written in Rust.☆24Mar 9, 2026Updated 2 weeks ago
- A tool to detect acquired AMR genes directly from long read sequencing data.☆20Jan 31, 2026Updated last month
- Strain-level haplotyping for metagenomes with short or long-reads.☆65Apr 10, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Rapidly extract reads from a FASTQ file based on taxonomic classification via Kraken2.☆13Jan 26, 2026Updated 2 months ago
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- Tool for quick offline batch conversion of Genbank IDs or accessions to taxonomy strings☆14Jan 8, 2024Updated 2 years ago
- A selection of short scripts for analyzing microbial genomes☆14Jun 26, 2018Updated 7 years ago
- Detect contigs of complete circular genomes☆23Jun 6, 2019Updated 6 years ago
- strain-level analysis tools☆39Oct 21, 2024Updated last year
- gap opening realigner for BAM data streams☆18Oct 17, 2012Updated 13 years ago
- Bitpacked sequence trait and implementation☆16Feb 27, 2026Updated last month
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Mar 28, 2017Updated 9 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Host depletion optimised for clinical metagenomic sequencing applications☆16Nov 18, 2024Updated last year
- Index kmtricks bf matrices☆47Feb 13, 2026Updated last month
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆37Feb 17, 2026Updated last month
- Population analysis PIPEline 🛠🧬☆23Mar 2, 2026Updated 3 weeks ago
- Bifrost graph gene caller.☆98Jan 20, 2026Updated 2 months ago
- ☆15Jan 28, 2026Updated 2 months ago
- Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab☆11Oct 16, 2022Updated 3 years ago