A genome browser in your Jupyter notebook
☆31Mar 13, 2026Updated 3 months ago
Alternatives and similar repositories for genomenotebook
Users that are interested in genomenotebook are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Identifying ViRal and Circular content in metAgenomes☆14Dec 13, 2018Updated 7 years ago
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated 2 years ago
- Reference-free variant discovery in large eukaryotic genomes☆42Jul 13, 2021Updated 4 years ago
- A database for signatures of public genomic sources☆18Jan 1, 2026Updated 5 months ago
- Ancestral Sequence Reconstruction in Python☆15May 9, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Searching large collections of sequencing data with genome-scale queries☆18Jun 8, 2026Updated last week
- Origin of Chromosomal Replication Assessment. Python tool for the analysis of circular bacterial DNA sequences in order to find their ori…☆18Oct 10, 2025Updated 8 months ago
- Iterative masking algorithm on MSA Transformer to generate synthetic sequences☆30Jan 17, 2024Updated 2 years ago
- Chimera: A Versatile Metagenomic Classification Tool☆21Feb 1, 2026Updated 4 months ago
- kMetaShot is an alignment-free taxonomic classifier based on k-mer/minimizer counting for MAGs☆11Apr 27, 2026Updated last month
- The CRISPR assembler☆35May 13, 2021Updated 5 years ago
- Repository for edgePython which is a Python implementation of the Bioconductor edgeR package for differential analysis of genomics count …☆81Updated this week
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 9 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆40Mar 7, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Discovery of conserved gene clusters in multiple genomes☆133Jan 16, 2026Updated 5 months ago
- Pandas-based Data Handler for VCF, BED, and SAM Files☆32Oct 22, 2021Updated 4 years ago
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆25Mar 7, 2026Updated 3 months ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆22Jun 9, 2026Updated last week
- ☆18Mar 21, 2023Updated 3 years ago
- A simple IPython/Jupyter cell magic command to display name and version of imported modules.☆16Aug 27, 2017Updated 8 years ago
- A Python interface to gb-io, a fast GenBank parser written in Rust.☆24May 21, 2026Updated 3 weeks ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆67Apr 10, 2025Updated last year
- Rapidly extract reads from FASTX files based on taxonomic classification via Kraken2.☆13Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- A selection of short scripts for analyzing microbial genomes☆14Jun 26, 2018Updated 7 years ago
- Tool for quick offline batch conversion of Genbank IDs or accessions to taxonomy strings☆14Jan 8, 2024Updated 2 years ago
- Detect contigs of complete circular genomes☆23Jun 6, 2019Updated 7 years ago
- strain-level analysis tools☆41Oct 21, 2024Updated last year
- gap opening realigner for BAM data streams☆18Oct 17, 2012Updated 13 years ago
- Bitpacked sequence trait and implementation☆18Feb 27, 2026Updated 3 months ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Mar 28, 2017Updated 9 years ago
- A tool to detect acquired AMR genes directly from long read sequencing data.☆28Jan 31, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆39Apr 7, 2026Updated 2 months ago
- Index kmtricks bf matrices☆49Apr 29, 2026Updated last month
- Population analysis PIPEline 🛠🧬☆24Mar 2, 2026Updated 3 months ago
- Bifrost graph gene caller.☆98Updated this week
- ☆15Jan 28, 2026Updated 4 months ago
- Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab☆11Oct 16, 2022Updated 3 years ago
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 10 months ago