[PLoS Computational Biology 2025] SpaMask: Dual Masking Graph Autoencoder with Contrastive Learning for Spatial Transcriptomics
☆13Apr 8, 2025Updated last year
Alternatives and similar repositories for SpaMask
Users that are interested in SpaMask are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- We propose SpatialCVGAE, which uses multiple variational graph autoencoders with different initializations to simultaneously generate cor…☆13Jun 24, 2025Updated last year
- A self-supervised learning method with Vision Transformer as backbone network for resolution enhancement in spatial transcriptomics.☆10Aug 25, 2025Updated 10 months ago
- [PLoS Computational Biology 2025] Domain-Adversarial Masked Autoencoder (SpaDAMA) for cell type deconvolution in spatial transcriptomics …☆12Nov 6, 2025Updated 8 months ago
- [Advanced Science 2025] SpaBatch: Deep learning-based cross-slice integration and 3D spatial domain identification in spatial transcripto…☆21Jun 8, 2026Updated last month
- ☆16May 27, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Masked adversarial neural network for cell type deconvolution (MACD) in spatial transcriptomics data☆14Jun 16, 2025Updated last year
- mclSTExp: Multimodal Contrastive Learning for Spatial Gene Expression Prediction Using Histology Images☆42Jan 10, 2025Updated last year
- High-Resolution Spatial Transcriptomics Using Histology Images with HisToSGE (Pathology Image Large Model, Transformers)☆22Jul 24, 2024Updated 2 years ago
- SpaDiT: Diffusion Transformer for Spatial Gene Expression Prediction using scRNA-seq☆25Jun 2, 2026Updated last month
- scASDC is an attention enhanced structural deep clustering method for scRNA-seq cell clustering☆17Aug 8, 2024Updated last year
- Deep Clustering Representation for Spatially Resolved Transcriptomics Data via Multi-view Variational Graph Auto-Encoders with Consensus …☆15Jun 24, 2025Updated last year
- Transformer-based deep learning for spatial transcriptomics enhancement.☆12Mar 15, 2024Updated 2 years ago
- Masked Graph Autoencoders with Contrastive Augmentation for Spatially Resolved Transcriptomics Data☆19Aug 7, 2024Updated last year
- We propose STG3Net, a novel method designed to integrate multiple SRT datasets and correct batch effects.☆14Aug 8, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- [Briefings in Bioinformatics 2025] A GCN and pathology image large model-based method to predict single-cell resolution spatial gene expr…☆27Dec 1, 2025Updated 7 months ago
- Pretrained-Guided Masked Conditional Diffusion Models for Microbiome Data Analysis☆14Aug 7, 2024Updated last year
- ☆28Apr 29, 2026Updated 2 months ago
- Benchmarking clustering, alignment, and integration methods for spatial transcriptomics☆27Dec 19, 2024Updated last year
- Dual-attention Enhanced Spatial Transcriptomics Denoiser☆13May 8, 2025Updated last year
- Research Paper: "Graph Contrastive Learning as a Versatile Foundation for Advanced scRNA-seq Data Analysis"☆11Nov 20, 2024Updated last year
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- ☆10Apr 22, 2024Updated 2 years ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆48Jul 16, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆11Sep 7, 2023Updated 2 years ago
- Source code from the book Machine Learning in Action, corrected the errors, updated according to python 3.X☆15Mar 3, 2019Updated 7 years ago
- This is a thesis template for Yunnan University, which is suitable for master students! 这里是一个云南大学硕士毕业论文模板latex。该模板是根据其云南大学毕业模板要求撰写,分享供大家使…☆17Jul 26, 2018Updated 7 years ago
- For further understanding the wide array of emotions embedded in human speech, we are introducing an emotional speech corpus. In contrast…☆11Oct 29, 2018Updated 7 years ago
- ☆17Dec 7, 2023Updated 2 years ago
- ☆15Dec 19, 2025Updated 7 months ago
- [IJCAI'23] Prompt Federated Learning for Weather Forecasting: Toward Foundation Models on Meteorological Data.☆14Oct 3, 2024Updated last year
- ☆17Feb 18, 2025Updated last year
- Identify spatial domain☆92May 29, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆20Oct 28, 2025Updated 8 months ago
- a simply crawler framework☆12Jun 5, 2023Updated 3 years ago
- ☆23Oct 27, 2025Updated 8 months ago
- A deletion finder through re-aligning the whole soft-clipping read☆12Jul 2, 2016Updated 10 years ago
- Official implementation of JAMIE, Joint variational Autoencoders for Multimodal Imputation and Embedding☆16Sep 11, 2025Updated 10 months ago
- scAce: an adaptive embedding and clustering method for scRNA-seq data☆12Sep 8, 2023Updated 2 years ago
- This is the PyTorch implementation of the paper ''STINR: Deciphering Spatial Transcriptomics via Implicit Neural Representation'' (CVPR 2…☆20Mar 26, 2025Updated last year