wenwenmin / HisToSGELinks
High-Resolution Spatial Transcriptomics Using Histology Images with HisToSGE (Pathology Image Large Model, Transformers)
☆19Updated last year
Alternatives and similar repositories for HisToSGE
Users that are interested in HisToSGE are comparing it to the libraries listed below
Sorting:
- ☆16Updated last year
- [Briefings in Bioinformatics 2025] A GCN and pathology image large model-based method to predict single-cell resolution spatial gene expr…☆25Updated 6 months ago
- Masked adversarial neural network for cell type deconvolution (MACD) in spatial transcriptomics data☆16Updated 3 months ago
- We propose SpatialCVGAE, which uses multiple variational graph autoencoders with different initializations to simultaneously generate cor…☆13Updated 3 months ago
- Pretrained-Guided Masked Conditional Diffusion Models for Microbiome Data Analysis☆14Updated last year
- mclSTExp: Multimodal Contrastive Learning for Spatial Gene Expression Prediction Using Histology Images☆40Updated 8 months ago
- ☆43Updated 5 months ago
- Large Language Models for Spatial Transcriptomics Analysis☆11Updated 9 months ago
- Her2 Breast Cancer Project☆87Updated 2 years ago
- VTrans: A VAE-based Pre-trained Transformer Method for Microbiome Data Analysis☆10Updated 10 months ago
- PyTorch implementation of HisToGene☆42Updated 3 years ago
- [PLoS Computational Biology 2025] Domain-Adversarial Masked Autoencoder (SpaDAMA) for cell type deconvolution in spatial transcriptomics …☆10Updated 2 months ago
- A self-supervised learning method with Vision Transformer as backbone network for resolution enhancement in spatial transcriptomics.☆10Updated 3 weeks ago
- Deep Clustering Representation for Spatially Resolved Transcriptomics Data via Multi-view Variational Graph Auto-Encoders with Consensus …☆13Updated 3 months ago
- ☆100Updated 3 months ago
- Masked Graph Autoencoders with Contrastive Augmentation for Spatially Resolved Transcriptomics Data☆17Updated last year
- sc-MTOP is an analysis framework based on deep learning and computational pathology. This framework aims to characterize the tumor ecosys…☆40Updated 4 months ago
- [PLoS Computational Biology 2025] SpaMask: Dual Masking Graph Autoencoder with Contrastive Learning for Spatial Transcriptomics☆11Updated 5 months ago
- Code for ST_IGI package☆30Updated 2 months ago
- A generative toolkit to translate H&E images to multiplexed IHC☆53Updated 9 months ago
- ☆73Updated 4 months ago
- Deep learning on histopathology images.☆130Updated 4 years ago
- ☆11Updated 7 months ago
- Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning☆81Updated 11 months ago
- Code for the THItoGene☆24Updated 5 months ago
- ☆43Updated 4 months ago
- ☆56Updated 2 years ago
- ☆141Updated 9 months ago
- Integrating histology and spatial transcriptomics - NeurIPS 2024☆310Updated 3 weeks ago
- ☆46Updated 3 years ago