High-Resolution Spatial Transcriptomics Using Histology Images with HisToSGE (Pathology Image Large Model, Transformers)
☆22Jul 24, 2024Updated last year
Alternatives and similar repositories for HisToSGE
Users that are interested in HisToSGE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Masked adversarial neural network for cell type deconvolution (MACD) in spatial transcriptomics data☆14Jun 16, 2025Updated last year
- ☆16May 27, 2024Updated 2 years ago
- scASDC is an attention enhanced structural deep clustering method for scRNA-seq cell clustering☆17Aug 8, 2024Updated last year
- Deep Clustering Representation for Spatially Resolved Transcriptomics Data via Multi-view Variational Graph Auto-Encoders with Consensus …☆15Jun 24, 2025Updated last year
- Masked Graph Autoencoders with Contrastive Augmentation for Spatially Resolved Transcriptomics Data☆19Aug 7, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Pretrained-Guided Masked Conditional Diffusion Models for Microbiome Data Analysis☆14Aug 7, 2024Updated last year
- SpaDiT: Diffusion Transformer for Spatial Gene Expression Prediction using scRNA-seq☆25Jun 2, 2026Updated last month
- We propose STG3Net, a novel method designed to integrate multiple SRT datasets and correct batch effects.☆14Aug 8, 2024Updated last year
- mclSTExp: Multimodal Contrastive Learning for Spatial Gene Expression Prediction Using Histology Images☆42Jan 10, 2025Updated last year
- [Briefings in Bioinformatics 2025] A GCN and pathology image large model-based method to predict single-cell resolution spatial gene expr…☆27Dec 1, 2025Updated 7 months ago
- A self-supervised learning method with Vision Transformer as backbone network for resolution enhancement in spatial transcriptomics.☆10Aug 25, 2025Updated 10 months ago
- [Advanced Science 2025] SpaBatch: Deep learning-based cross-slice integration and 3D spatial domain identification in spatial transcripto…☆21Jun 8, 2026Updated last month
- [PLoS Computational Biology 2025] SpaMask: Dual Masking Graph Autoencoder with Contrastive Learning for Spatial Transcriptomics☆13Apr 8, 2025Updated last year
- [PLoS Computational Biology 2025] Domain-Adversarial Masked Autoencoder (SpaDAMA) for cell type deconvolution in spatial transcriptomics …☆12Nov 6, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Transformer-based deep learning for spatial transcriptomics enhancement.☆12Mar 15, 2024Updated 2 years ago
- Identify spatial domain☆92May 29, 2025Updated last year
- Benchmarking clustering, alignment, and integration methods for spatial transcriptomics☆27Dec 19, 2024Updated last year
- A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.☆26Mar 13, 2024Updated 2 years ago
- This repository provides the dataset HEMIT for H&E to mIHC image-to-image translation task☆25Dec 11, 2024Updated last year
- A tool for spatial omics single-modal clustering, multi-modal clustering, slice alignment, cross-modal alignment, multi-modal alignment, …☆20May 6, 2026Updated 2 months ago
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- ☆10Apr 22, 2024Updated 2 years ago
- ☆11Sep 7, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆33Jul 18, 2025Updated last year
- Colored Kimia Path24 Dataset: Configurations and Benchmarks with Deep Embeddings☆10Jun 6, 2024Updated 2 years ago
- Source code from the book Machine Learning in Action, corrected the errors, updated according to python 3.X☆15Mar 3, 2019Updated 7 years ago
- Fast Semantic Segmentation Image Annotation with Segment Anything Model (SAM)☆14Mar 23, 2024Updated 2 years ago
- This is a thesis template for Yunnan University, which is suitable for master students! 这里是一个云南大学硕士毕业论文模板latex。该模板是根据其云南大学毕业模板要求撰写,分享供大家使…☆17Jul 26, 2018Updated 7 years ago
- ☆13May 28, 2025Updated last year
- EBStore dataset for "EMS: 3D Eyebrow Modeling from Single-view Images"(SIGGRAPH Asia 2023)☆16May 3, 2025Updated last year
- A Transformer Model Exploiting Histology Images and Spatial Gene Expression☆22Mar 18, 2025Updated last year
- ☆17Feb 18, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Unsupervised Semantic Segmentation for Pathology☆17Nov 21, 2024Updated last year
- Spatial Expression-Aligned Learning to improve pathology foundation models☆48Feb 17, 2026Updated 5 months ago
- ☆19Oct 28, 2025Updated 8 months ago
- [CVPR 2024] Feature Re-Embedding: Towards Foundation Model-Level Performance in Computational Pathology☆137Sep 19, 2025Updated 10 months ago
- ☆168Dec 20, 2024Updated last year
- ☆23Oct 27, 2025Updated 8 months ago
- ☆11Aug 7, 2020Updated 5 years ago