High-Resolution Spatial Transcriptomics Using Histology Images with HisToSGE (Pathology Image Large Model, Transformers)
☆21Jul 24, 2024Updated last year
Alternatives and similar repositories for HisToSGE
Users that are interested in HisToSGE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Masked adversarial neural network for cell type deconvolution (MACD) in spatial transcriptomics data☆14Jun 16, 2025Updated 10 months ago
- ☆16May 27, 2024Updated last year
- scASDC is an attention enhanced structural deep clustering method for scRNA-seq cell clustering☆17Aug 8, 2024Updated last year
- Masked Graph Autoencoders with Contrastive Augmentation for Spatially Resolved Transcriptomics Data☆18Aug 7, 2024Updated last year
- Deep Clustering Representation for Spatially Resolved Transcriptomics Data via Multi-view Variational Graph Auto-Encoders with Consensus …☆15Jun 24, 2025Updated 9 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Pretrained-Guided Masked Conditional Diffusion Models for Microbiome Data Analysis☆14Aug 7, 2024Updated last year
- SpaDiT: Diffusion Transformer for Spatial Gene Expression Prediction using scRNA-seq☆25Mar 19, 2026Updated 3 weeks ago
- We propose STG3Net, a novel method designed to integrate multiple SRT datasets and correct batch effects.☆14Aug 8, 2024Updated last year
- mclSTExp: Multimodal Contrastive Learning for Spatial Gene Expression Prediction Using Histology Images☆41Jan 10, 2025Updated last year
- [Briefings in Bioinformatics 2025] A GCN and pathology image large model-based method to predict single-cell resolution spatial gene expr…☆25Dec 1, 2025Updated 4 months ago
- We propose SpatialCVGAE, which uses multiple variational graph autoencoders with different initializations to simultaneously generate cor…☆13Jun 24, 2025Updated 9 months ago
- A self-supervised learning method with Vision Transformer as backbone network for resolution enhancement in spatial transcriptomics.☆10Aug 25, 2025Updated 7 months ago
- [Advanced Science 2025] SpaBatch: Deep learning-based cross-slice integration and 3D spatial domain identification in spatial transcripto…☆19Nov 27, 2025Updated 4 months ago
- [PLoS Computational Biology 2025] Domain-Adversarial Masked Autoencoder (SpaDAMA) for cell type deconvolution in spatial transcriptomics …☆12Nov 6, 2025Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- [PLoS Computational Biology 2025] SpaMask: Dual Masking Graph Autoencoder with Contrastive Learning for Spatial Transcriptomics☆13Apr 8, 2025Updated last year
- Transformer-based deep learning for spatial transcriptomics enhancement.☆12Mar 15, 2024Updated 2 years ago
- Identify spatial domain☆90May 29, 2025Updated 10 months ago
- A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.☆26Mar 13, 2024Updated 2 years ago
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- [ICLR 2025] Stem: Gene Expression Inference from Histology Images☆48Apr 15, 2025Updated last year
- ☆10Apr 22, 2024Updated last year
- ☆11Sep 7, 2023Updated 2 years ago
- This is a thesis template for Yunnan University, which is suitable for master students! 这里是一个云南大学硕士毕业论文模板latex。该模板是根据其云南大学毕业模板要求撰写，分享供大家使…☆17Jul 26, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Source code from the book Machine Learning in Action, corrected the errors, updated according to python 3.X☆15Mar 3, 2019Updated 7 years ago
- Colored Kimia Path24 Dataset: Configurations and Benchmarks with Deep Embeddings☆10Jun 6, 2024Updated last year
- Fast Semantic Segmentation Image Annotation with Segment Anything Model (SAM)☆14Mar 23, 2024Updated 2 years ago
- Official implementation for "Cluster-wise Graph Transformer with Dual-granularity Kernelized Attention" (NeurIPS2024 Spotlight)☆17Oct 10, 2024Updated last year
- ☆13May 28, 2025Updated 10 months ago
- ☆22Mar 23, 2024Updated 2 years ago
- Keras implementation of InfoGAN (work in progress)☆12May 25, 2017Updated 8 years ago
- A Transformer Model Exploiting Histology Images and Spatial Gene Expression☆22Mar 18, 2025Updated last year
- ☆17Feb 18, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- EBStore dataset for "EMS: 3D Eyebrow Modeling from Single-view Images"(SIGGRAPH Asia 2023)☆16May 3, 2025Updated 11 months ago
- [CVPR 2024] Feature Re-Embedding: Towards Foundation Model-Level Performance in Computational Pathology☆134Sep 19, 2025Updated 6 months ago
- Unsupervised Semantic Segmentation for Pathology☆17Nov 21, 2024Updated last year
- Processing of histological data for cytoarchitecture analyses.☆21Feb 20, 2025Updated last year
- ☆27Mar 30, 2026Updated 2 weeks ago
- A novel spatial multi-modal omics framework, named PRototype-Aware Graph Adaptative aggregation (PRAGA) for spatial multi-modal omics ana…☆19May 29, 2025Updated 10 months ago
- This repository provides the dataset HEMIT for H&E to mIHC image-to-image translation task☆19Dec 11, 2024Updated last year