High-Resolution Spatial Transcriptomics Using Histology Images with HisToSGE (Pathology Image Large Model, Transformers)
☆20Jul 24, 2024Updated last year
Alternatives and similar repositories for HisToSGE
Users that are interested in HisToSGE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Masked adversarial neural network for cell type deconvolution (MACD) in spatial transcriptomics data☆14Jun 16, 2025Updated 9 months ago
- ☆16May 27, 2024Updated last year
- scASDC is an attention enhanced structural deep clustering method for scRNA-seq cell clustering☆17Aug 8, 2024Updated last year
- Masked Graph Autoencoders with Contrastive Augmentation for Spatially Resolved Transcriptomics Data☆18Aug 7, 2024Updated last year
- Deep Clustering Representation for Spatially Resolved Transcriptomics Data via Multi-view Variational Graph Auto-Encoders with Consensus …☆15Jun 24, 2025Updated 9 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Pretrained-Guided Masked Conditional Diffusion Models for Microbiome Data Analysis☆14Aug 7, 2024Updated last year
- SpaDiT: Diffusion Transformer for Spatial Gene Expression Prediction using scRNA-seq☆25Mar 19, 2026Updated last week
- We propose STG3Net, a novel method designed to integrate multiple SRT datasets and correct batch effects.☆14Aug 8, 2024Updated last year
- [Briefings in Bioinformatics 2025] A GCN and pathology image large model-based method to predict single-cell resolution spatial gene expr…☆25Dec 1, 2025Updated 3 months ago
- We propose SpatialCVGAE, which uses multiple variational graph autoencoders with different initializations to simultaneously generate cor…☆13Jun 24, 2025Updated 9 months ago
- A self-supervised learning method with Vision Transformer as backbone network for resolution enhancement in spatial transcriptomics.☆10Aug 25, 2025Updated 7 months ago
- [Advanced Science 2025] SpaBatch: Deep learning-based cross-slice integration and 3D spatial domain identification in spatial transcripto…☆18Nov 27, 2025Updated 4 months ago
- [PLoS Computational Biology 2025] Domain-Adversarial Masked Autoencoder (SpaDAMA) for cell type deconvolution in spatial transcriptomics …☆11Nov 6, 2025Updated 4 months ago
- [PLoS Computational Biology 2025] SpaMask: Dual Masking Graph Autoencoder with Contrastive Learning for Spatial Transcriptomics☆13Apr 8, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Identify spatial domain☆90May 29, 2025Updated 9 months ago
- A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.☆26Mar 13, 2024Updated 2 years ago
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- [ICLR 2025] Stem: Gene Expression Inference from Histology Images☆47Apr 15, 2025Updated 11 months ago
- ☆10Apr 22, 2024Updated last year
- ☆10Sep 7, 2023Updated 2 years ago
- This is a thesis template for Yunnan University, which is suitable for master students! 这里是一个云南大学硕士毕业论文模板latex。该模板是根据其云南大 学毕业模板要求撰写，分享供大家使…☆16Jul 26, 2018Updated 7 years ago
- Source code from the book Machine Learning in Action, corrected the errors, updated according to python 3.X☆15Mar 3, 2019Updated 7 years ago
- Colored Kimia Path24 Dataset: Configurations and Benchmarks with Deep Embeddings☆10Jun 6, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Official implementation for "Cluster-wise Graph Transformer with Dual-granularity Kernelized Attention" (NeurIPS2024 Spotlight)☆17Oct 10, 2024Updated last year
- ☆14May 28, 2025Updated 9 months ago
- ☆22Mar 23, 2024Updated 2 years ago
- Keras implementation of InfoGAN (work in progress)☆12May 25, 2017Updated 8 years ago
- A Transformer Model Exploiting Histology Images and Spatial Gene Expression☆22Mar 18, 2025Updated last year
- ☆17Feb 18, 2025Updated last year
- This repository provides the dataset HEMIT for H&E to mIHC image-to-image translation task☆17Dec 11, 2024Updated last year
- Processing of histological data for cytoarchitecture analyses.☆21Feb 20, 2025Updated last year
- [CVPR 2024] Feature Re-Embedding: Towards Foundation Model-Level Performance in Computational Pathology☆133Sep 19, 2025Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Unsupervised Semantic Segmentation for Pathology☆17Nov 21, 2024Updated last year
- A novel spatial multi-modal omics framework, named PRototype-Aware Graph Adaptative aggregation (PRAGA) for spatial multi-modal omics ana…☆18May 29, 2025Updated 9 months ago
- ☆160Dec 20, 2024Updated last year
- ☆24Jan 21, 2026Updated 2 months ago
- Modify Bing search result redirect link to target link to realize direct access to the target page of Bing search result and speed up the…☆22Jan 21, 2026Updated 2 months ago
- ☆11Aug 7, 2020Updated 5 years ago
- Computational Framework to Analyse Spatial Heterogeneity in Visum, IMC or MIBI data sets☆12May 3, 2022Updated 3 years ago