wenwenmin / HisToSGEView external linksLinks
High-Resolution Spatial Transcriptomics Using Histology Images with HisToSGE (Pathology Image Large Model, Transformers)
☆20Jul 24, 2024Updated last year
Alternatives and similar repositories for HisToSGE
Users that are interested in HisToSGE are comparing it to the libraries listed below
Sorting:
- Masked adversarial neural network for cell type deconvolution (MACD) in spatial transcriptomics data☆14Jun 16, 2025Updated 7 months ago
- Deep Clustering Representation for Spatially Resolved Transcriptomics Data via Multi-view Variational Graph Auto-Encoders with Consensus …☆15Jun 24, 2025Updated 7 months ago
- Masked Graph Autoencoders with Contrastive Augmentation for Spatially Resolved Transcriptomics Data☆18Aug 7, 2024Updated last year
- Pretrained-Guided Masked Conditional Diffusion Models for Microbiome Data Analysis☆14Aug 7, 2024Updated last year
- mclSTExp: Multimodal Contrastive Learning for Spatial Gene Expression Prediction Using Histology Images☆40Jan 10, 2025Updated last year
- [Briefings in Bioinformatics 2025] A GCN and pathology image large model-based method to predict single-cell resolution spatial gene expr…☆25Dec 1, 2025Updated 2 months ago
- We propose SpatialCVGAE, which uses multiple variational graph autoencoders with different initializations to simultaneously generate cor…☆13Jun 24, 2025Updated 7 months ago
- [Advanced Science 2025] SpaBatch: Deep learning-based cross-slice integration and 3D spatial domain identification in spatial transcripto…☆18Nov 27, 2025Updated 2 months ago
- [PLoS Computational Biology 2025] SpaMask: Dual Masking Graph Autoencoder with Contrastive Learning for Spatial Transcriptomics☆13Apr 8, 2025Updated 10 months ago
- Transformer-based deep learning for spatial transcriptomics enhancement.☆12Mar 15, 2024Updated last year
- Identify spatial domain☆88May 29, 2025Updated 8 months ago
- A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.☆25Mar 13, 2024Updated last year
- [ICLR 2025] Stem: Gene Expression Inference from Histology Images☆46Apr 15, 2025Updated 9 months ago
- ☆10Apr 22, 2024Updated last year
- Fast Semantic Segmentation Image Annotation with Segment Anything Model (SAM)☆14Mar 23, 2024Updated last year
- Colored Kimia Path24 Dataset: Configurations and Benchmarks with Deep Embeddings☆10Jun 6, 2024Updated last year
- Processing of histological data for cytoarchitecture analyses.☆21Feb 20, 2025Updated 11 months ago
- The source code for "High-Parameter Spatial Multi-Omics through Histology-Anchored Integration"☆26Jan 24, 2026Updated 3 weeks ago
- ☆21Mar 23, 2024Updated last year
- [CVPR 2024] Feature Re-Embedding: Towards Foundation Model-Level Performance in Computational Pathology☆134Sep 19, 2025Updated 4 months ago
- This is a thesis template for Yunnan University, which is suitable for master students! 这里是一个云南大学硕士毕业论文模板latex。该模板是根据其云南大学毕业模板要求撰写，分享供大家使…☆16Jul 26, 2018Updated 7 years ago
- Computational Framework to Analyse Spatial Heterogeneity in Visum, IMC or MIBI data sets☆12May 3, 2022Updated 3 years ago
- A Transformer Model Exploiting Histology Images and Spatial Gene Expression☆22Mar 18, 2025Updated 10 months ago
- EBStore dataset for "EMS: 3D Eyebrow Modeling from Single-view Images"(SIGGRAPH Asia 2023)☆17May 3, 2025Updated 9 months ago
- ☆16Oct 1, 2023Updated 2 years ago
- Source code from the book Machine Learning in Action, corrected the errors, updated according to python 3.X☆15Mar 3, 2019Updated 6 years ago
- ☆19Jan 21, 2026Updated 3 weeks ago
- ☆78May 13, 2025Updated 9 months ago
- [MICCAI 2024] Official Repo of "HistGen: Histopathology Report Generation via Local-Global Feature Encoding and Cross-modal Context Inter…☆82Dec 23, 2024Updated last year
- STPath: A Generative Foundation Model for Integrating Spatial Transcriptomics and Whole Slide Images☆37Jul 27, 2025Updated 6 months ago
- Benchmarking clustering, alignment, and integration methods for spatial transcriptomics☆23Dec 19, 2024Updated last year
- ☆20Sep 19, 2022Updated 3 years ago
- ☆15Jun 21, 2022Updated 3 years ago
- [CVPR 2024] Official PyTorch Implementation for Adam☆25Nov 24, 2025Updated 2 months ago
- Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning☆83Oct 22, 2024Updated last year
- nnSVG: scalable method to identify spatially variable genes (SVGs) in spatially-resolved transcriptomics data☆23May 19, 2025Updated 8 months ago
- PathBench-MIL: A comprehensive, flexible Benchmarking / AutoML framework for multiple instance learning in Histopathology☆28Jan 9, 2026Updated last month
- spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples☆29Nov 21, 2025Updated 2 months ago
- An easy-to-use PyTorch library for Pathology Image ANalysis Orchestrator (PIANO), including generating patches from whole slide images, u…☆38Aug 24, 2025Updated 5 months ago