High-Resolution Spatial Transcriptomics Using Histology Images with HisToSGE (Pathology Image Large Model, Transformers)
☆20Jul 24, 2024Updated last year
Alternatives and similar repositories for HisToSGE
Users that are interested in HisToSGE are comparing it to the libraries listed below
Sorting:
- Masked adversarial neural network for cell type deconvolution (MACD) in spatial transcriptomics data☆14Jun 16, 2025Updated 8 months ago
- ☆16May 27, 2024Updated last year
- scASDC is an attention enhanced structural deep clustering method for scRNA-seq cell clustering☆17Aug 8, 2024Updated last year
- Masked Graph Autoencoders with Contrastive Augmentation for Spatially Resolved Transcriptomics Data☆18Aug 7, 2024Updated last year
- Pretrained-Guided Masked Conditional Diffusion Models for Microbiome Data Analysis☆14Aug 7, 2024Updated last year
- mclSTExp: Multimodal Contrastive Learning for Spatial Gene Expression Prediction Using Histology Images☆40Jan 10, 2025Updated last year
- SpaDiT: Diffusion Transformer for Spatial Gene Expression Prediction using scRNA-seq☆25Dec 12, 2025Updated 2 months ago
- A self-supervised learning method with Vision Transformer as backbone network for resolution enhancement in spatial transcriptomics.☆10Aug 25, 2025Updated 6 months ago
- We propose SpatialCVGAE, which uses multiple variational graph autoencoders with different initializations to simultaneously generate cor…☆13Jun 24, 2025Updated 8 months ago
- [PLoS Computational Biology 2025] Domain-Adversarial Masked Autoencoder (SpaDAMA) for cell type deconvolution in spatial transcriptomics …☆11Nov 6, 2025Updated 4 months ago
- [Advanced Science 2025] SpaBatch: Deep learning-based cross-slice integration and 3D spatial domain identification in spatial transcripto…☆18Nov 27, 2025Updated 3 months ago
- [PLoS Computational Biology 2025] SpaMask: Dual Masking Graph Autoencoder with Contrastive Learning for Spatial Transcriptomics☆13Apr 8, 2025Updated 10 months ago
- A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.☆25Mar 13, 2024Updated last year
- [ICLR 2025] Stem: Gene Expression Inference from Histology Images☆47Apr 15, 2025Updated 10 months ago
- Fast Semantic Segmentation Image Annotation with Segment Anything Model (SAM)☆14Mar 23, 2024Updated last year
- ☆11Aug 7, 2020Updated 5 years ago
- Colored Kimia Path24 Dataset: Configurations and Benchmarks with Deep Embeddings☆10Jun 6, 2024Updated last year
- Processing of histological data for cytoarchitecture analyses.☆21Feb 20, 2025Updated last year
- Official implementation for "Cluster-wise Graph Transformer with Dual-granularity Kernelized Attention" (NeurIPS2024 Spotlight)☆16Oct 10, 2024Updated last year
- ☆22Mar 23, 2024Updated last year
- [CVPR 2024] Feature Re-Embedding: Towards Foundation Model-Level Performance in Computational Pathology☆133Sep 19, 2025Updated 5 months ago
- A novel spatial multi-modal omics framework, named PRototype-Aware Graph Adaptative aggregation (PRAGA) for spatial multi-modal omics ana…☆18May 29, 2025Updated 9 months ago
- Unsupervised Semantic Segmentation for Pathology☆17Nov 21, 2024Updated last year
- EBStore dataset for "EMS: 3D Eyebrow Modeling from Single-view Images"(SIGGRAPH Asia 2023)☆17May 3, 2025Updated 10 months ago
- Computational Framework to Analyse Spatial Heterogeneity in Visum, IMC or MIBI data sets☆12May 3, 2022Updated 3 years ago
- ☆161Dec 20, 2024Updated last year
- Source code from the book Machine Learning in Action, corrected the errors, updated according to python 3.X☆15Mar 3, 2019Updated 7 years ago
- ☆16Oct 1, 2023Updated 2 years ago
- ☆20Jan 21, 2026Updated last month
- ☆17Feb 18, 2025Updated last year
- ☆80May 13, 2025Updated 9 months ago
- STPath: A Generative Foundation Model for Integrating Spatial Transcriptomics and Whole Slide Images☆38Jul 27, 2025Updated 7 months ago
- Benchmarking clustering, alignment, and integration methods for spatial transcriptomics☆23Dec 19, 2024Updated last year
- [MICCAI 2024] Official Repo of "HistGen: Histopathology Report Generation via Local-Global Feature Encoding and Cross-modal Context Inter…☆83Dec 23, 2024Updated last year
- ☆21Dec 23, 2025Updated 2 months ago
- MIPHEI-ViT: Repository to train Image-to-Image H&E to Immunofluorescence models☆28Dec 3, 2025Updated 3 months ago
- [CVPR 2024] Official PyTorch Implementation for Adam☆25Nov 24, 2025Updated 3 months ago
- Super-resolved spatial transcriptomics by deep data fusion☆73Mar 30, 2023Updated 2 years ago
- Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning☆83Oct 22, 2024Updated last year