wenwenmin / scstGCNLinks
[Briefings in Bioinformatics 2025] A GCN and pathology image large model-based method to predict single-cell resolution spatial gene expression by integrating multimodal information.
☆26Updated 8 months ago
Alternatives and similar repositories for scstGCN
Users that are interested in scstGCN are comparing it to the libraries listed below
Sorting:
- ☆17Updated last year
- Masked adversarial neural network for cell type deconvolution (MACD) in spatial transcriptomics data☆14Updated 5 months ago
- High-Resolution Spatial Transcriptomics Using Histology Images with HisToSGE (Pathology Image Large Model, Transformers)☆18Updated last year
- Pretrained-Guided Masked Conditional Diffusion Models for Microbiome Data Analysis☆14Updated last year
- Her2 Breast Cancer Project☆87Updated 3 years ago
- [PLoS Computational Biology 2025] Domain-Adversarial Masked Autoencoder (SpaDAMA) for cell type deconvolution in spatial transcriptomics …☆10Updated 3 weeks ago
- A self-supervised learning method with Vision Transformer as backbone network for resolution enhancement in spatial transcriptomics.☆10Updated 3 months ago
- [PLoS Computational Biology 2025] SpaMask: Dual Masking Graph Autoencoder with Contrastive Learning for Spatial Transcriptomics☆11Updated 7 months ago
- We propose SpatialCVGAE, which uses multiple variational graph autoencoders with different initializations to simultaneously generate cor…☆12Updated 5 months ago
- ☆54Updated 2 months ago
- Masked Graph Autoencoders with Contrastive Augmentation for Spatially Resolved Transcriptomics Data☆18Updated last year
- PyTorch implementation of HisToGene☆43Updated 4 years ago
- ☆153Updated 11 months ago
- [Advanced Science 2025] SpaBatch: Deep learning-based cross-slice integration and 3D spatial domain identification in spatial transcripto…☆14Updated last week
- ☆45Updated 8 months ago
- Deep Clustering Representation for Spatially Resolved Transcriptomics Data via Multi-view Variational Graph Auto-Encoders with Consensus …☆15Updated 5 months ago
- ☆107Updated 5 months ago
- Code for ST_IGI package☆34Updated 4 months ago
- scASDC is an attention enhanced structural deep clustering method for scRNA-seq cell clustering☆17Updated last year
- We propose STG3Net, a novel method designed to integrate multiple SRT datasets and correct batch effects.☆13Updated last year
- Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning☆80Updated last year
- Identify spatial domain☆86Updated 6 months ago
- ☆51Updated 3 years ago
- ☆13Updated 2 weeks ago
- ☆17Updated 4 months ago
- A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.☆24Updated last year
- ☆23Updated 7 months ago
- ☆41Updated last year
- ☆42Updated last year
- An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"☆18Updated 2 years ago