Longitudinal multi-omics analysis identifies responses of megakaryocytes, erythroid cells and plasmablasts as hallmarks of severe COVID-19 trajectories
☆12Feb 20, 2021Updated 5 years ago
Alternatives and similar repositories for COVIDOMICs
Users that are interested in COVIDOMICs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Denoising 3D TEM tomography via Advanced Neural Radiance Fields(NeRF)☆11Feb 21, 2025Updated last year
- ☆45May 3, 2021Updated 5 years ago
- A cross-package Bioconductor workflow for analysing methylation array data☆11Mar 31, 2017Updated 9 years ago
- A nextflow pipeline with a GMS touch for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbio…☆10Jan 23, 2026Updated 9 months ago
- Epigenetic Smoking status Estimator☆10Nov 24, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Multiple trajectory alignment of time-series data☆10Aug 23, 2023Updated 3 years ago
- a tool for summarizing and integrating gene-set analysis results☆18Aug 14, 2024Updated 2 years ago
- Cohort construction and analysis code for our target trial emulation of thresholds for invasive ventilation in hypoxemic respiratory fail…☆12Nov 11, 2022Updated 3 years ago
- scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…☆21Mar 31, 2024Updated 2 years ago
- ☆12Mar 10, 2024Updated 2 years ago
- MICCAI 2023: Radiomics-Informed Deep Learning for Classification of Atrial Fibrillation Sub-Types from Left-Atrium CT Volumes☆15Jul 23, 2023Updated 3 years ago
- introductory workshop material on containers for scientific computing☆17Dec 21, 2025Updated 10 months ago
- ☆14Jun 15, 2022Updated 4 years ago
- hazard and excess hazard modelling with multidimensional penalized splines☆12Mar 25, 2026Updated 7 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Research Paper: "Graph Contrastive Learning as a Versatile Foundation for Advanced scRNA-seq Data Analysis"☆11Nov 20, 2024Updated last year
- NBIS workshop in Neural Nets and Deep Learning☆19May 23, 2024Updated 2 years ago
- Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis☆53Jun 6, 2025Updated last year
- UCSC liftOver (genome build converter) for vcf format☆12Nov 29, 2017Updated 8 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆18Feb 22, 2022Updated 4 years ago
- MRI-based Deep Learning Segmentation and Radiomics of Sarcoma Tumors in Mice☆16Mar 24, 2023Updated 3 years ago
- ☆16Apr 20, 2021Updated 5 years ago
- FHIR resources Release R5☆12Jul 3, 2023Updated 3 years ago
- sharing code for the GBD 2021 anemia paper which will be published in the Lancet Haematology INFR-15310☆12May 17, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Comparison of joint models for competing risks and longitudinal data☆12Nov 21, 2017Updated 8 years ago
- Software used for papers published by CAUSALab members☆12Oct 23, 2025Updated last year
- Reproducible Analytical Pipeline of the Hospital Standardised Mortality Ratio (HSMR) quarterly publication☆11Apr 9, 2026Updated 6 months ago
- Leveraging the largest US study of adolescent neurodevelopment to train AI models for longitudinal mental health prediction☆13Sep 2, 2026Updated 2 months ago
- To reveal the cellular heterogeneity within flow cytometry data, clustering and pseudotime analysis can be performed. Here, we demonstrat…☆14Jul 5, 2022Updated 4 years ago
- Julia implementation of joint models combining longitudinal and survival endpoints☆13Mar 15, 2024Updated 2 years ago
- GRiNCH: Graph-Regularized NMF and Clustering for Hi-C☆10Mar 15, 2024Updated 2 years ago
- ☆11Dec 31, 2024Updated last year
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data☆13Feb 20, 2026Updated 8 months ago
- Python Implementation of the CoLlAGe radiomics descriptor. CoLlAGe captures subtle anisotropic differences in disease pathologies by meas…☆20Updated this week
- Survival Extrapolation With a Flexible Parametric Model and External Data☆13Mar 10, 2026Updated 7 months ago
- Rapp☆11Mar 7, 2023Updated 3 years ago
- Causal Mediation analysis☆12Oct 13, 2026Updated 3 weeks ago
- Codes for generating stlearn figures☆11May 22, 2023Updated 3 years ago
- General targeted machine learning for modern causal mediation analysis☆13May 4, 2026Updated 6 months ago