Systems-Immunology-IKMB / COVIDOMICs
Longitudinal multi-omics analysis identifies responses of megakaryocytes, erythroid cells and plasmablasts as hallmarks of severe COVID-19 trajectories
☆10Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for COVIDOMICs
- ☆33Updated 3 years ago
- An R package for drug response prediction and drug-gene association prediction.☆17Updated 7 months ago
- Repository for Short Course: Deep Learning in Omics☆17Updated 2 years ago
- Find causal cell-types underlying complex trait genetics☆72Updated last month
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆89Updated last month
- Toolbox with R scripts☆38Updated 6 years ago
- ☆12Updated 6 years ago
- Visualization of Colocalization Between eQTL and GWAS Data☆76Updated 2 years ago
- Hypoxia associated molecular feature analysis☆35Updated 5 years ago
- Single cell transcriptomics reveals cerebrospinal fluid immune dysregulation during healthy brain aging and cognitive impairment☆27Updated last year
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆24Updated 3 years ago
- scDataviz: single cell dataviz and downstream analyses☆61Updated 3 years ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated last year
- R Package for Single-Cell Dataset Processing and Visualization☆53Updated 3 years ago
- "Principles of Spatial Transcriptomics Analysis with Bioconductor" book☆41Updated 3 weeks ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 6 years ago
- A tool for removing doublets from single-cell RNA-seq data☆69Updated 3 years ago
- A Toolkit for Construct Tree-shaped Trajectory for Flow and Mass Cytometry data☆24Updated 4 years ago
- ☆40Updated 3 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆24Updated last year
- Comprehensive tutorial for differential methylation analysis, differential variability analysis and integrative analysis☆19Updated 6 months ago
- A R package for advanced single cell data viz☆59Updated last year
- identifying disease critical cell types and programs from single cell RNAseq☆51Updated 2 years ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆47Updated last month
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆36Updated 2 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆29Updated 10 months ago
- ☆74Updated 10 months ago
- LDlinkR☆56Updated 7 months ago
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆49Updated last month
- LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.☆105Updated 2 years ago