federicobocci / spliceJACLinks
☆10Updated 3 years ago
Alternatives and similar repositories for spliceJAC
Users that are interested in spliceJAC are comparing it to the libraries listed below
Sorting:
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 4 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Updated 2 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆28Updated 4 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆58Updated 3 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated 2 years ago
- Code related to scRNA analysis using the scAmpi workflow☆27Updated 7 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated last year
- ☆19Updated last year
- Code for scKINETICS (ISMB 2023)☆22Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- benchmark for single-cell RNA-seq imputation methods☆29Updated last year
- ☆33Updated 11 months ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- Individual level Differential Expression Analysis for Single cells☆26Updated 3 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated 2 years ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- ☆10Updated 3 years ago
- ☆39Updated 4 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆43Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 6 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- single-cell Nucleosome Methylation Transcription☆15Updated 7 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆45Updated 5 months ago
- Code, data and analysis for moslin.☆15Updated last year
- identifying disease critical cell types and programs from single cell RNAseq☆58Updated 3 years ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- ☆27Updated 4 years ago