donghaifang / STMaskLinks
☆16Updated last year
Alternatives and similar repositories for STMask
Users that are interested in STMask are comparing it to the libraries listed below
Sorting:
- Masked adversarial neural network for cell type deconvolution (MACD) in spatial transcriptomics data☆14Updated 7 months ago
- [Briefings in Bioinformatics 2025] A GCN and pathology image large model-based method to predict single-cell resolution spatial gene expr…☆25Updated 2 months ago
- Pretrained-Guided Masked Conditional Diffusion Models for Microbiome Data Analysis☆14Updated last year
- High-Resolution Spatial Transcriptomics Using Histology Images with HisToSGE (Pathology Image Large Model, Transformers)☆20Updated last year
- A self-supervised learning method with Vision Transformer as backbone network for resolution enhancement in spatial transcriptomics.☆10Updated 5 months ago
- [PLoS Computational Biology 2025] Domain-Adversarial Masked Autoencoder (SpaDAMA) for cell type deconvolution in spatial transcriptomics …☆11Updated 3 months ago
- scASDC is an attention enhanced structural deep clustering method for scRNA-seq cell clustering☆17Updated last year
- Deep Clustering Representation for Spatially Resolved Transcriptomics Data via Multi-view Variational Graph Auto-Encoders with Consensus …☆15Updated 7 months ago
- mclSTExp: Multimodal Contrastive Learning for Spatial Gene Expression Prediction Using Histology Images☆40Updated last year
- We propose SpatialCVGAE, which uses multiple variational graph autoencoders with different initializations to simultaneously generate cor…☆13Updated 7 months ago
- We propose STG3Net, a novel method designed to integrate multiple SRT datasets and correct batch effects.☆14Updated last year
- PyTorch implementation of HisToGene☆52Updated 4 years ago
- [PLoS Computational Biology 2025] SpaMask: Dual Masking Graph Autoencoder with Contrastive Learning for Spatial Transcriptomics☆13Updated 10 months ago
- ☆53Updated 10 months ago
- Her2 Breast Cancer Project☆93Updated 3 years ago
- ☆63Updated 4 months ago
- Masked Graph Autoencoders with Contrastive Augmentation for Spatially Resolved Transcriptomics Data☆18Updated last year
- ☆53Updated 3 years ago
- ☆13Updated 11 months ago
- The source code for "High-Parameter Spatial Multi-Omics through Histology-Anchored Integration"☆25Updated 2 weeks ago
- ☆14Updated 8 months ago
- A visual–omics foundation model to bridge histopathology with spatial transcriptomics☆129Updated 8 months ago
- SpaDiT: Diffusion Transformer for Spatial Gene Expression Prediction using scRNA-seq☆25Updated last month
- [Advanced Science 2025] SpaBatch: Deep learning-based cross-slice integration and 3D spatial domain identification in spatial transcripto…☆18Updated 2 months ago
- sc-MTOP is an analysis framework based on deep learning and computational pathology. This framework aims to characterize the tumor ecosys…☆44Updated 9 months ago
- STPath: A Generative Foundation Model for Integrating Spatial Transcriptomics and Whole Slide Images☆37Updated 6 months ago
- Code for ST_IGI package☆34Updated 6 months ago
- Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning☆83Updated last year
- Code for the THItoGene☆28Updated 10 months ago
- Deep learning on histopathology images.☆140Updated 4 years ago