We propose SpatialCVGAE, which uses multiple variational graph autoencoders with different initializations to simultaneously generate corresponding low-dimensional embeddings, and then utilizes consensus clustering.
☆13Jun 24, 2025Updated last year
Alternatives and similar repositories for SpatialCVGAE
Users that are interested in SpatialCVGAE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A self-supervised learning method with Vision Transformer as backbone network for resolution enhancement in spatial transcriptomics.☆10Aug 25, 2025Updated 11 months ago
- [PLoS Computational Biology 2025] SpaMask: Dual Masking Graph Autoencoder with Contrastive Learning for Spatial Transcriptomics☆13Apr 8, 2025Updated last year
- [PLoS Computational Biology 2025] Domain-Adversarial Masked Autoencoder (SpaDAMA) for cell type deconvolution in spatial transcriptomics …☆12Nov 6, 2025Updated 9 months ago
- [Advanced Science 2025] SpaBatch: Deep learning-based cross-slice integration and 3D spatial domain identification in spatial transcripto…☆21Jun 8, 2026Updated 2 months ago
- ☆16May 27, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Masked adversarial neural network for cell type deconvolution (MACD) in spatial transcriptomics data☆14Jun 16, 2025Updated last year
- High-Resolution Spatial Transcriptomics Using Histology Images with HisToSGE (Pathology Image Large Model, Transformers)☆22Jul 24, 2024Updated 2 years ago
- SpaDiT: Diffusion Transformer for Spatial Gene Expression Prediction using scRNA-seq☆25Jun 2, 2026Updated 2 months ago
- mclSTExp: Multimodal Contrastive Learning for Spatial Gene Expression Prediction Using Histology Images☆42Jan 10, 2025Updated last year
- scASDC is an attention enhanced structural deep clustering method for scRNA-seq cell clustering☆17Aug 8, 2024Updated 2 years ago
- We propose STG3Net, a novel method designed to integrate multiple SRT datasets and correct batch effects.☆15Aug 8, 2024Updated 2 years ago
- Pretrained-Guided Masked Conditional Diffusion Models for Microbiome Data Analysis☆14Aug 7, 2024Updated 2 years ago
- [Briefings in Bioinformatics 2025] A GCN and pathology image large model-based method to predict single-cell resolution spatial gene expr…☆27Dec 1, 2025Updated 8 months ago
- ☆29Apr 29, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Benchmarking clustering, alignment, and integration methods for spatial transcriptomics☆28Dec 19, 2024Updated last year
- Dual-attention Enhanced Spatial Transcriptomics Denoiser☆13May 8, 2025Updated last year
- ☆10Apr 22, 2024Updated 2 years ago
- ☆11Sep 7, 2023Updated 2 years ago
- Source code from the book Machine Learning in Action, corrected the errors, updated according to python 3.X☆15Mar 3, 2019Updated 7 years ago
- This is a thesis template for Yunnan University, which is suitable for master students! 这里是一个云南大学硕士毕业论文模板latex。该模板是根据其云南大学毕业模板要求撰写，分享供大家使…☆17Jul 26, 2018Updated 8 years ago
- ☆17Dec 7, 2023Updated 2 years ago
- For further understanding the wide array of emotions embedded in human speech, we are introducing an emotional speech corpus. In contrast…☆11Oct 29, 2018Updated 7 years ago
- 主要是用python进行生存分析的步骤，包括生存分析(逐步和单因素)，KM曲线、决策曲线，ROC曲线，训练测试样本分布比较☆11Dec 21, 2020Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆15Dec 19, 2025Updated 7 months ago
- [IJCAI'23] Prompt Federated Learning for Weather Forecasting: Toward Foundation Models on Meteorological Data.☆14Oct 3, 2024Updated last year
- ☆17Feb 18, 2025Updated last year
- Identify spatial domain☆93May 29, 2025Updated last year
- cox loss function and c-index calculation with pytorch☆12Jun 15, 2019Updated 7 years ago
- ☆23Oct 27, 2025Updated 9 months ago
- GraphLSurv: A Scalable Survival Prediction Network with Adaptive and Sparse Structure Learning for Histopathological Whole-Slide Images -…☆13Aug 24, 2023Updated 2 years ago
- This is the PyTorch implementation of the paper ''STINR: Deciphering Spatial Transcriptomics via Implicit Neural Representation'' (CVPR 2…☆20Mar 26, 2025Updated last year
- ☆22Jan 6, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples☆31Mar 26, 2026Updated 4 months ago
- Official repository of the 2020 UHN RADCURE challenge.☆15Nov 21, 2022Updated 3 years ago
- ☆25Apr 3, 2025Updated last year
- Code for the spatialLIBD R/Bioconductor package and shiny app☆112Jul 24, 2026Updated 2 weeks ago
- ☆14May 12, 2018Updated 8 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- nnSVG: scalable method to identify spatially variable genes (SVGs) in spatially-resolved transcriptomics data☆25Jul 14, 2026Updated 3 weeks ago