We propose SpatialCVGAE, which uses multiple variational graph autoencoders with different initializations to simultaneously generate corresponding low-dimensional embeddings, and then utilizes consensus clustering.
☆13Jun 24, 2025Updated 11 months ago
Alternatives and similar repositories for SpatialCVGAE
Users that are interested in SpatialCVGAE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A self-supervised learning method with Vision Transformer as backbone network for resolution enhancement in spatial transcriptomics.☆10Aug 25, 2025Updated 9 months ago
- [PLoS Computational Biology 2025] SpaMask: Dual Masking Graph Autoencoder with Contrastive Learning for Spatial Transcriptomics☆13Apr 8, 2025Updated last year
- [PLoS Computational Biology 2025] Domain-Adversarial Masked Autoencoder (SpaDAMA) for cell type deconvolution in spatial transcriptomics …☆12Nov 6, 2025Updated 6 months ago
- ☆16May 27, 2024Updated last year
- [Advanced Science 2025] SpaBatch: Deep learning-based cross-slice integration and 3D spatial domain identification in spatial transcripto…☆19Nov 27, 2025Updated 5 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Masked adversarial neural network for cell type deconvolution (MACD) in spatial transcriptomics data☆14Jun 16, 2025Updated 11 months ago
- SpaDiT: Diffusion Transformer for Spatial Gene Expression Prediction using scRNA-seq☆25May 7, 2026Updated 2 weeks ago
- scASDC is an attention enhanced structural deep clustering method for scRNA-seq cell clustering☆17Aug 8, 2024Updated last year
- Masked Graph Autoencoders with Contrastive Augmentation for Spatially Resolved Transcriptomics Data☆19Aug 7, 2024Updated last year
- We propose STG3Net, a novel method designed to integrate multiple SRT datasets and correct batch effects.☆14Aug 8, 2024Updated last year
- Transformer-based deep learning for spatial transcriptomics enhancement.☆12Mar 15, 2024Updated 2 years ago
- Deep Clustering Representation for Spatially Resolved Transcriptomics Data via Multi-view Variational Graph Auto-Encoders with Consensus …☆15Jun 24, 2025Updated 11 months ago
- Pretrained-Guided Masked Conditional Diffusion Models for Microbiome Data Analysis☆14Aug 7, 2024Updated last year
- [Briefings in Bioinformatics 2025] A GCN and pathology image large model-based method to predict single-cell resolution spatial gene expr…☆26Dec 1, 2025Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Dual-attention Enhanced Spatial Transcriptomics Denoiser☆13May 8, 2025Updated last year
- Official repository for Characterization of tumor heterogeneity through segmentation-free representation learning on multiplexed imaging …☆15Sep 28, 2025Updated 7 months ago
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- ☆10Apr 22, 2024Updated 2 years ago
- ☆11Sep 7, 2023Updated 2 years ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆49Jul 16, 2024Updated last year
- This is a thesis template for Yunnan University, which is suitable for master students! 这里是一个云南大学硕士毕业论文模板latex。该模板是根据其云南大学毕业模板要求撰写，分享供大家使…☆17Jul 26, 2018Updated 7 years ago
- ☆17Dec 7, 2023Updated 2 years ago
- Source code from the book Machine Learning in Action, corrected the errors, updated according to python 3.X☆15Mar 3, 2019Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- [IJCAI'23] Prompt Federated Learning for Weather Forecasting: Toward Foundation Models on Meteorological Data.☆14Oct 3, 2024Updated last year
- ☆17Feb 18, 2025Updated last year
- Identify spatial domain☆92May 29, 2025Updated 11 months ago
- Official repository of the 2020 UHN RADCURE challenge.☆15Nov 21, 2022Updated 3 years ago
- ☆27Apr 29, 2026Updated 3 weeks ago
- cox loss function and c-index calculation with pytorch☆12Jun 15, 2019Updated 6 years ago
- GraphLSurv: A Scalable Survival Prediction Network with Adaptive and Sparse Structure Learning for Histopathological Whole-Slide Images -…☆12Aug 24, 2023Updated 2 years ago
- The source code for "High-Parameter Spatial Multi-Omics through Histology-Anchored Integration"☆35May 15, 2026Updated last week
- Removes tiling artifacts created from stitching together adjacent tiles in large segmentation tasks.☆28May 6, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆16Nov 25, 2024Updated last year
- ☆24Apr 3, 2025Updated last year
- ☆18Jan 6, 2024Updated 2 years ago
- Segmentation framework implemented in tensorflow 2 (tf.keras).☆15Feb 12, 2025Updated last year
- spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples☆31Mar 26, 2026Updated last month
- Code for the spatialLIBD R/Bioconductor package and shiny app☆113Updated this week
- These are code and scripts for MVI+ HCC scRNA-seq analysis.☆19Aug 24, 2023Updated 2 years ago