Alternatives and similar repositories for topiary

Users that are interested in topiary are comparing it to the libraries listed below

• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆27Updated 4 months ago
• bodenlab / GRASP
  Graphical Representation of Ancestral Sequence Predictions
  ☆12Updated 2 years ago
• maovshao / PLMAlign
  PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity
  ☆20Updated 5 months ago
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆57Updated 3 years ago
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆61Updated last year
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆44Updated 6 months ago
• andyposbe / ColabFold-Pipeline-Toolkit
  The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.
  ☆17Updated 2 years ago
• EngqvistLab / Tome
  A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
  ☆65Updated 5 years ago
• nmatzke / 3diphy
  Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…
  ☆24Updated 9 months ago
• jnoms / vpSAT
  Virus Protein Structural Analysis Toolkit
  ☆14Updated last year
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆29Updated 2 years ago
• rcedgar / reseek
  Protein structure alignment and search algorithm
  ☆79Updated 2 weeks ago
• microsoft / protnote
  ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…
  ☆58Updated 9 months ago
• Merck / bgc-pipeline
  ☆12Updated last year
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆78Updated 5 months ago
• jafetgado / PyCanal
  Conservation analysis of homologous proteins with Python
  ☆13Updated 4 years ago
• amaurypm / pseqsid
  Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.
  ☆18Updated 2 years ago
• clairemcwhite / vcmsa
  ☆30Updated 2 years ago
• KULL-Centre / _2022_functional-sites-cagiada
  ☆23Updated 2 years ago
• idptools / sparrow
  Next generation sequence parameter library for proteins
  ☆38Updated last month
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆34Updated last year
• JudeWells / chainsaw
  ☆47Updated last year
• jbloomlab / SARS2-mut-fitness
  Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates
  ☆21Updated last year
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆97Updated this week
• YuSugihara / ancseq
  Wrapper tool for ancestral sequence and indel reconstruction using IQ-TREE
  ☆11Updated 3 months ago
• wrf / pdbcolor
  Python code to color a PDB structure based on parameters from a multiple sequence alignment
  ☆33Updated last month
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆27Updated 2 weeks ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆31Updated 2 years ago
• SizheQiu / Seq2Topt
  A predictor of enzyme optimal temperature
  ☆11Updated 10 months ago
• chayan7 / flashfold
  A tool for protein and protein complex structure prediction.
  ☆29Updated 7 months ago