Alternatives and similar repositories for DDAffinity

Users that are interested in DDAffinity are comparing it to the libraries listed below

• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆37Updated last year
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆40Updated last year
• skalyaanamoorthy / PSLMs
  ☆21Updated last year
• charlesxu90 / helm-gpt
  HELM-GPT: de novo macrocyclic peptide design using generative pre-trained transformer
  ☆31Updated last year
• protddg-bench / protddg-bench
  Scoring methods for predicting the DDG upon protein mutation
  ☆16Updated 2 years ago
• PKUliujl / GeoSeqBuilder
  ☆32Updated last year
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆33Updated 2 years ago
• liuyf020419 / SCUBA-D
  ☆61Updated last year
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆61Updated 8 months ago
• AspirinCode / AlphaPPImd
  Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks
  ☆32Updated last year
• tommyhuangthu / EvoEF2
  Physical energy function for protein sequence design
  ☆36Updated 2 years ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆53Updated 3 months ago
• Gonglab-THU / GeoStab
  ☆39Updated last year
• PickyBinders / PickyBinder
  Docking Tool Benchmarking Workflow
  ☆25Updated last year
• danny305 / StabilityOracle
  ☆30Updated 4 months ago
• FTD007 / PInet
  ☆26Updated 3 years ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆72Updated 5 months ago
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆25Updated 2 years ago
• ohuelab / ColabDesign-cyclic-binder
  ☆37Updated 2 years ago
• WeiLab-Biology / DeepProSite
  ☆34Updated 2 years ago
• oxpig / kasearch
  KA-Search: Rapid and exhaustive sequence identity search of known antibodies
  ☆23Updated last year
• samgoldman97 / enzyme-datasets
  Enzyme datasets used to benchmark enzyme-substrate promiscuity models
  ☆40Updated 4 years ago
• sokrypton / af2bind
  ☆54Updated 2 months ago
• strauchlab / iNNterfaceDesign
  ☆20Updated 3 years ago
• dahjan / DMS_opt
  ☆74Updated 5 years ago
• Lailabcode / DeepViscosity
  DeepViscosity is a deep learning ANN model developed to predict high concentrated monoclonal antibody viscosity classes (Low <= 20cps, Hi…
  ☆20Updated 6 months ago
• Furman-Lab / Peptide_docking_with_AF2_and_RosettAfold
  Code and data used in https://doi.org/10.1101/2021.08.01.454656
  ☆54Updated 3 years ago
• ChenPy00 / PPB-Affinity
  Baseline model for PPB-Affinity benchmark data
  ☆34Updated 8 months ago
• wallnerlab / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆54Updated 5 months ago
• Bitbol-Lab / rag-esm
  RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences
  ☆27Updated 5 months ago