Alternatives and similar repositories for DeepProtein

Users that are interested in DeepProtein are comparing it to the libraries listed below

• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆77Updated 3 months ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆72Updated last week
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆39Updated last year
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆114Updated last month
• luwei0917 / BindingGYM
  ☆34Updated 4 months ago
• yoakiyama / MSA_Pairformer
  ☆119Updated 3 weeks ago
• wenjiegroup / ProMEP
  Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
  ☆67Updated 3 months ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆107Updated 4 months ago
• liuyf020419 / SCUBA-D
  ☆61Updated last year
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆125Updated 3 weeks ago
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆69Updated last year
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆65Updated 3 months ago
• petergroth / kermut
  This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …
  ☆40Updated 4 months ago
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆89Updated 6 months ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆106Updated last month
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆91Updated 3 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated 2 years ago
• RSchmirler / data-repo_plm-finetune-eval
  Data repository for "Fine-tuning protein language models boosts predictions across diverse tasks"
  ☆50Updated last month
• Profluent-AI / E1
  Profluent-E1 family of Protein Encoder Models
  ☆93Updated 3 weeks ago
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆46Updated last year
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆86Updated last year
• Exscientia / abodybuilder3
  ☆72Updated last year
• ai4protein / ProtSSN
  🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…
  ☆78Updated 6 months ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆74Updated last month
• westlake-repl / Denovo-Pinal
  Text-guided protein design
  ☆88Updated 3 weeks ago
• programmablebio / ptm-mamba
  ☆83Updated 6 months ago
• wukevin / proteinclip
  Contrastive learning harmonizing protein language models and natural language models
  ☆38Updated last year
• TencentAI4S / IgGM
  Official Implementation of IgGM
  ☆164Updated last week
• AI4PDLab / ProtRL
  ☆97Updated last week
• duolinwang / S-PLM
  S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure
  ☆69Updated 3 weeks ago