jiaqingxie / DeepProteinLinks
Deep Learning Library and Benchmark for Protein Sequence Learning (Bioinformatics 2025)
☆34Updated 3 months ago
Alternatives and similar repositories for DeepProtein
Users that are interested in DeepProtein are comparing it to the libraries listed below
Sorting:
- Fast deep learning methods for large-scale protein-protein interaction screening☆75Updated 2 months ago
- Efficient implementatin of ESM family.☆74Updated last month
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆71Updated 3 months ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆44Updated 10 months ago
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆34Updated 2 months ago
- Code for humanization of antibody and nanobody☆56Updated last month
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆66Updated last month
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆54Updated 3 weeks ago
- ☆29Updated 2 months ago
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆76Updated 4 months ago
- ☆39Updated last year
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆86Updated 3 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆54Updated 4 months ago
- ☆88Updated 2 weeks ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆119Updated 6 months ago
- ☆101Updated last week
- Aligning protein generative models with experimental fitness☆107Updated 2 months ago
- A command-line interface and Python library for generating AlphaFold3 input files.☆37Updated 4 months ago
- ☆61Updated last year
- Metrics for our protein design competitions.☆35Updated 11 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated last year
- Text-guided protein design☆85Updated 3 weeks ago
- Results and data from the pilot round of the Protein Engineering Tournament☆30Updated 6 months ago
- ☆116Updated 3 months ago
- Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”☆40Updated 7 months ago
- Learning the language of protein-protein interactions☆98Updated 2 weeks ago
- ☆44Updated 4 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆66Updated 2 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆66Updated 10 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆32Updated last year