Deep Learning Library and Benchmark for Protein Sequence Learning (Bioinformatics 2025)
☆46Mar 30, 2026Updated 6 months ago
Alternatives and similar repositories for DeepProtein
Users that are interested in DeepProtein are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Contrastive learning harmonizing protein language models and natural language models☆44Jun 12, 2024Updated 2 years ago
- ☆33Dec 12, 2024Updated last year
- Mol-Opt: a toolbox for molecular design☆24Apr 15, 2024Updated 2 years ago
- Pretrained METL models with minimal dependencies☆16Sep 16, 2026Updated 2 weeks ago
- ☆32Oct 7, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- BindCraft modified to make PyRosetta use and installation optional: no license needed☆163Jul 10, 2026Updated 2 months ago
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆46Aug 5, 2025Updated last year
- GraphPart, a data partitioning method for ML on biological sequences☆36Oct 26, 2023Updated 2 years ago
- ☆12Jun 16, 2023Updated 3 years ago
- DeepViscosity is a deep learning ANN model developed to predict high concentrated monoclonal antibody viscosity classes (Low <= 20cps, Hi…☆29Feb 23, 2026Updated 7 months ago
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆72Aug 13, 2025Updated last year
- A computational method to optimize degenerate codons for synthesizing an informed combinatorial mutagenesis protein variant library☆17Feb 18, 2025Updated last year
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆155Apr 16, 2025Updated last year
- Results and data from the pilot round of the Protein Engineering Tournament☆31Mar 25, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆19Dec 23, 2024Updated last year
- Biological prediction models made simple.☆54Sep 18, 2026Updated last week
- Homomer symmetry prediction from protein sequence☆46Mar 13, 2025Updated last year
- ☆29Sep 18, 2026Updated last week
- PPI version of Pythia☆38Jun 13, 2026Updated 3 months ago
- ☆17May 18, 2026Updated 4 months ago
- ☆639Feb 6, 2025Updated last year
- ☆42Mar 30, 2025Updated last year
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆121Feb 19, 2026Updated 7 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- VenusFSFP: Few-Shot Protein Fitness Prediction☆119Nov 18, 2025Updated 10 months ago
- ☆52Jun 4, 2025Updated last year
- Deconvolving mutation effects on protein stability and function with disentangled protein language models☆18May 15, 2026Updated 4 months ago
- Python Toolbox For Rosetta Silent Files Processing☆10Aug 2, 2021Updated 5 years ago
- Efficient implementatin of ESM family.☆87Sep 9, 2025Updated last year
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Apr 13, 2026Updated 5 months ago
- ☆12Nov 16, 2023Updated 2 years ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆168Mar 28, 2026Updated 6 months ago
- Codes for our paper "Full-Atom Peptide Design with Geometric Latent Diffusion" (NeurIPS 2024)☆134Apr 16, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- TUnA: Transformer-based Uncertainty Aware model for PPI Prediction☆18Dec 21, 2025Updated 9 months ago
- ☆259Sep 22, 2026Updated last week
- Finding patch of conserved amino acid sites in 3D structure☆14Apr 13, 2025Updated last year
- Iterative masking algorithm on MSA Transformer to generate synthetic sequences☆30Jan 17, 2024Updated 2 years ago
- ☆29May 26, 2026Updated 4 months ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆283Feb 14, 2024Updated 2 years ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆126May 27, 2025Updated last year