wenbostar / PDVLinks
PDV: an integrative proteomics data viewer
☆48Updated 2 months ago
Alternatives and similar repositories for PDV
Users that are interested in PDV are comparing it to the libraries listed below
Sorting:
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆117Updated last week
- ☆62Updated last year
- R package - MSstats☆83Updated this week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆49Updated 2 weeks ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆58Updated 2 months ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆79Updated last year
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆39Updated 3 months ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆87Updated 2 months ago
- Report processing and protein quantification for MS-based proteomics☆46Updated last year
- ☆24Updated 2 years ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆51Updated 2 weeks ago
- Interpretation of proteomics identification results☆48Updated 2 months ago
- Differential Expression Analysis tool box R lang package for omics data☆45Updated 3 weeks ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆119Updated last month
- The repo for LFQ-Analyst☆30Updated 10 months ago
- ☆13Updated last year
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆31Updated 3 months ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆79Updated 3 years ago
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆25Updated 7 months ago
- Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.☆22Updated 3 years ago
- A Comet-based, best practices proteomics pipeline.☆37Updated last year
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆29Updated 3 months ago
- A cross-platform proteomics data analysis suite☆236Updated last week
- Score an Affinity Purification Mass Spectrometry Proteomics Experiment for Interactor Confidence☆10Updated 10 years ago
- A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant☆45Updated 5 months ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆82Updated 3 months ago
- TimsR: Easy access to timsTOF Pro data from R.☆10Updated 4 years ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated last month
- Rescoring and spectral library generation pipeline for proteomics.☆43Updated last week
- Fast and flexible semi-supervised learning for peptide detection in Python☆44Updated 3 months ago