Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
☆11Jun 3, 2025Updated 9 months ago
Alternatives and similar repositories for protViz
Users that are interested in protViz are comparing it to the libraries listed below
Sorting:
- draw rectangular statistical cartograms - CRAN package☆22Jan 27, 2026Updated last month
- Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package☆37May 1, 2024Updated last year
- amica: an interactive and user-friendly web-based platform for the analysis of proteomics data☆27Apr 3, 2025Updated 11 months ago
- Interactive software to analyze and browse mass spectrometry data☆21Jul 3, 2025Updated 8 months ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆51Mar 12, 2026Updated last week
- Low level infrastructure to handle MS spectra☆44Updated this week
- MSDK source code repository☆40Sep 22, 2022Updated 3 years ago
- A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.☆13Mar 11, 2026Updated last week
- Instrument Application Programming Interface☆53Sep 29, 2025Updated 5 months ago
- EuBIC 2023 developer's meeting☆13Jan 16, 2023Updated 3 years ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆68Jan 6, 2026Updated 2 months ago
- Differential Expression Analysis tool box R lang package for omics data☆47Updated this week
- Robust statistical inference for quantitative LC-MS proteomics☆33Dec 6, 2022Updated 3 years ago
- Library for mass spectrometry projects☆27Mar 6, 2026Updated last week
- Assigning precursor-product ion relationships in indiscriminant MS/MS data☆13Mar 3, 2026Updated 2 weeks ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆50Feb 10, 2026Updated last month
- ☆46Mar 14, 2025Updated last year
- ☆15Jun 3, 2021Updated 4 years ago
- ☆25Feb 24, 2026Updated 3 weeks ago
- This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data…☆46Dec 15, 2025Updated 3 months ago
- Access Orbitrap data in R lang using C# .NET assembly - bioconductor package☆61Feb 10, 2026Updated last month
- ☆23Mar 26, 2025Updated 11 months ago
- Scalable and self-optimizing processing workflow for untargeted LC-MS☆31Aug 3, 2024Updated last year
- This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network☆34Aug 4, 2023Updated 2 years ago
- An open-source Python package to unify raw MS data accession and storage.☆31Updated this week
- PDV: an integrative proteomics data viewer☆61Feb 18, 2026Updated last month
- R package for MetFrag☆24Sep 25, 2017Updated 8 years ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆30Feb 12, 2026Updated last month
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆26Aug 16, 2023Updated 2 years ago
- Load mass spectrometry mzXML files☆17Jul 14, 2022Updated 3 years ago
- Maven GUI: Metabolomics Analysis and Visualization Engine☆22Updated this week
- Top down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data☆31Oct 5, 2022Updated 3 years ago
- python scripts for proteogenomics analysis☆10Oct 17, 2019Updated 6 years ago
- PGx supports proteogenomic intregration of mass spectrometry (MS) proteomics data with next generation sequencing (NGS) by mapping identi…☆10Jul 9, 2024Updated last year
- ☆14Feb 11, 2020Updated 6 years ago
- An R package to visualize high-throughput sequencing data.☆12Nov 18, 2019Updated 6 years ago
- A python command line tool to generate modbed files for visualization on WashU Epigenome Browser☆11Dec 10, 2025Updated 3 months ago
- Tools for working with Variant Call Format files.☆12Jan 22, 2026Updated last month
- Batch effects removal method based on deep autoencoder and adversarial learning☆24Dec 28, 2024Updated last year