ProteoWizard / pwizLinks
The ProteoWizard Library is a set of software libraries and tools for rapid development of mass spectrometry and proteomic data analysis software.
☆278Updated this week
Alternatives and similar repositories for pwiz
Users that are interested in pwiz are comparing it to the libraries listed below
Sorting:
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆222Updated this week
- Python package for efficient mass spectrometry data processing and visualization☆154Updated 4 months ago
- MZmine 2 source code repository☆132Updated last year
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆134Updated 2 weeks ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆51Updated last week
- A cross-platform proteomics data analysis suite☆243Updated this week
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆120Updated last month
- ☆60Updated 4 months ago
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆101Updated this week
- pymzML - an interface between Python and mzML Mass spectrometry Files☆175Updated last month
- mzmine source code repository☆233Updated last week
- Public Workflows at GNPS☆62Updated last year
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆93Updated 4 months ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆65Updated 2 years ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆117Updated this week
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆362Updated 2 months ago
- This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis☆202Updated last month
- Thermo MSFileReader Python bindings☆69Updated 4 years ago
- Open-source C++ and Python module for opening binary timsTOF data files.☆49Updated last month
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆88Updated last month
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆58Updated 3 months ago
- Democratizing ML in proteomics☆39Updated last week
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆79Updated last year
- .NET DLL wrapper for reading Thermo .Raw files. Uses ThermoFisher.CommonCore NuGet packages provided by Thermo Fisher Scientific☆38Updated 3 weeks ago
- Rescoring and spectral library generation pipeline for proteomics.☆46Updated last week
- MS-cleavable search engine that enables interactomic analysis by identifying tandem mass spectra of cross-linked peptides.☆20Updated last month
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆46Updated this week
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆31Updated 5 months ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆83Updated 4 months ago
- Universal workbench incorporating msdial, msfinder, and mrmprobs☆74Updated this week