Alternatives and similar repositories for pwiz

Users that are interested in pwiz are comparing it to the libraries listed below

• CompOmics / ThermoRawFileParser
  Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono
  ☆222Updated 3 weeks ago
• mzmine / mzmine2
  MZmine 2 source code repository
  ☆133Updated last year
• bittremieux-lab / spectrum_utils
  Python package for efficient mass spectrometry data processing and visualization
  ☆155Updated 5 months ago
• levitsky / pyteomics
  Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…
  ☆138Updated last month
• pymzml / pymzML
  pymzML - an interface between Python and mzML Mass spectrometry Files
  ☆175Updated 3 weeks ago
• frallain / pymsfilereader
  Thermo MSFileReader Python bindings
  ☆69Updated 4 years ago
• Nesvilab / MSFragger
  Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
  ☆121Updated 2 months ago
• thermofisherlsms / RawFileReader
  ☆61Updated 5 months ago
• Nesvilab / philosopher
  PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering
  ☆118Updated 3 weeks ago
• kevinkovalchik / RawTools
  RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…
  ☆65Updated 2 years ago
• bigbio / proteomics-sample-metadata
  The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
  ☆95Updated 2 weeks ago
• Nesvilab / FragPipe
  A cross-platform proteomics data analysis suite
  ☆248Updated last week
• smith-chem-wisc / MetaMorpheus
  Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities
  ☆102Updated last week
• MannLabs / alphatims
  An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…
  ☆89Updated last week
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆53Updated last week
• michalsta / opentims
  Open-source C++ and Python module for opening binary timsTOF data files.
  ☆49Updated 2 months ago
• CCMS-UCSD / GNPS_Workflows
  Public Workflows at GNPS
  ☆62Updated last year
• sneumann / xcms
  This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis
  ☆204Updated 2 weeks ago
• diogobor / Scout
  MS-cleavable search engine that enables interactomic analysis by identifying tandem mass spectra of cross-linked peptides.
  ☆21Updated 2 months ago
• PNNL-Comp-Mass-Spec / Thermo-Raw-File-Reader
  .NET DLL wrapper for reading Thermo .Raw files. Uses ThermoFisher.CommonCore NuGet packages provided by Thermo Fisher Scientific
  ☆39Updated last month
• vdemichev / DiaNN
  DIA-NN - a universal automated software suite for DIA proteomics data analysis.
  ☆367Updated 3 months ago
• mzmine / mzmine
  mzmine source code repository
  ☆237Updated last week
• MannLabs / alphapeptdeep
  Deep learning framework for proteomics
  ☆131Updated last week
• MannLabs / alphamap
  An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
  ☆85Updated last week
• MannLabs / directlfq
  Fast and accurate label-free quantification for small and very large numbers of proteomes
  ☆59Updated last week
• kusterlab / prosit
  Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…
  ☆89Updated 2 years ago
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆43Updated 2 weeks ago
• thermofisherlsms / iapi
  Instrument Application Programming Interface
  ☆49Updated 6 months ago
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆47Updated last week
• OpenMS / OpenMS
  The codebase of the OpenMS project
  ☆523Updated this week