cancerdatasci / demeter2Links
Inference of gene dependency from RNAi screening datasets.
☆19Updated 5 years ago
Alternatives and similar repositories for demeter2
Users that are interested in demeter2 are comparing it to the libraries listed below
Sorting:
- Knowledge-primed neural networks☆38Updated 2 years ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated 7 months ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- CMap Notebooks for LINCS 2020 Workshop☆49Updated 4 years ago
- ☆38Updated 2 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆43Updated 2 years ago
- Prize-Collecting Steiner Forests for Interactomes☆62Updated last year
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆38Updated 8 years ago
- DRUGZ software☆25Updated 4 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- Search across publicly available datasets to find instances where a drug or cell line of interest has been profiled.☆47Updated 7 years ago
- Python API for Xena Hub☆55Updated 2 years ago
- Deep neural networks for predicting CpG methylation☆37Updated 8 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 4 years ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆66Updated 4 years ago
- Connectivity Map analysis in MATLAB☆46Updated 4 years ago
- 🏺 Exploring novel tumor epitope identification☆37Updated 5 years ago
- Code for the analyses in the human reference interactome paper.☆28Updated 3 years ago
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆18Updated 5 years ago
- ☆33Updated 3 years ago
- Predicting gene expression levels from genomic sequences☆55Updated 5 years ago
- DIABLO - an integrative multi-group, multi-dataset classification method☆26Updated 6 years ago
- ☆18Updated last year
- ARCHS4 RNA-seq processing scripts and web server pages.☆62Updated 5 years ago
- Deep learning model to predict degron sequences☆19Updated 2 years ago
- MHC Class I and Class II neoantigen binding prediction☆33Updated 5 months ago
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 11 months ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆73Updated this week
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 4 years ago