cancerdatasci / demeter2Links
Inference of gene dependency from RNAi screening datasets.
☆19Updated 5 years ago
Alternatives and similar repositories for demeter2
Users that are interested in demeter2 are comparing it to the libraries listed below
Sorting:
- DRUGZ software☆25Updated 4 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 4 years ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated 8 months ago
- Connectivity Map analysis in MATLAB☆47Updated 4 years ago
- CMap Notebooks for LINCS 2020 Workshop☆49Updated 4 years ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- 🏺 Exploring novel tumor epitope identification☆38Updated 5 years ago
- ☆33Updated 3 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆18Updated 5 years ago
- Prize-Collecting Steiner Forests for Interactomes☆63Updated last year
- ☆38Updated 2 years ago
- A shiny-based web tool for interactive analysis of DepMap data☆24Updated 4 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆73Updated last week
- Python API for Xena Hub☆55Updated 2 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆66Updated 4 years ago
- Immunoglobulin and T-Cell receptor rearrangement software☆51Updated 3 weeks ago
- ☆41Updated 5 years ago
- repository containing analysis scripts and auxiliary files☆36Updated 5 years ago
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆16Updated 4 years ago
- Code for the analyses in the human reference interactome paper.☆28Updated 3 years ago
- Deep learning model to predict degron sequences☆19Updated 2 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆44Updated 2 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆29Updated 8 years ago
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- predicting peptide and TCR interaction☆20Updated 5 years ago
- A project for exploring differentially active signaling paths related to proteomics datasets☆45Updated 6 months ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆22Updated 2 years ago
- A collection of useful functions for bioinformatics data analysis☆24Updated last month