Alternatives and similar repositories for RNA-seq-lambda:

Users that are interested in RNA-seq-lambda are comparing it to the libraries listed below

• 4dn-dcic / tibanna
  Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…
  ☆69Updated 2 weeks ago
• BD2KGenomics / toil-rnaseq
  UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline
  ☆40Updated 4 years ago
• CGATOxford / CGATPipelines
  Collection of CGAT NGS Pipelines
  ☆43Updated 6 years ago
• roryk / tiny-test-data
  Super small biological datasets for unit testing
  ☆60Updated 5 years ago
• ucsd-ccbb / VAPr
  VAPr: A Python package for NoSQL variant data storage, annotation and prioritization
  ☆36Updated 3 years ago
• srp33 / TCGA_RNASeq_Clinical
  ☆61Updated 4 years ago
• ENCODE-DCC / caper
  Cromwell/WDL wrapper for Python
  ☆56Updated last year
• broadinstitute / gnomad_qc
  ☆69Updated this week
• grst / snakemake_nextflow_wdl
  simple comparison of snakemake, nextflow and cromwell/wdl
  ☆50Updated 4 years ago
• Xinglab / PEGASAS
  Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)
  ☆19Updated 2 years ago
• nsalomonis / altanalyze
  AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…
  ☆103Updated 2 years ago
• aws-samples / amazon-omics-tutorials
  ☆68Updated 3 months ago
• broadinstitute / single_cell_portal
  Tutorials, workflows, and convenience scripts for Single Cell Portal
  ☆50Updated last year
• ENCODE-DCC / encode-data-usage-examples
  ☆10Updated 5 years ago
• stjude / CICERO
  CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.
  ☆38Updated this week
• pachterlab / scRNA-Seq-TCC-prep
  Preprocessing of single-cell RNA-Seq (deprecated)
  ☆62Updated 5 years ago
• BradnerLab / pipeline
  bradner lab computation pipeline scripts
  ☆54Updated 3 years ago
• yuchaojiang / Canopy
  Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.
  ☆68Updated 3 years ago
• statgen / gotcloud
  Genomes on the Cloud, Mapping & Variant Calling Pipelines
  ☆34Updated 8 years ago
• 3DGenomes / TADbit
  TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…
  ☆101Updated 3 months ago
• Novartis / pisces
  PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using …
  ☆29Updated 10 months ago
• broadinstitute / cromwell-tools
  A collection of Python clients and accessory scripts for interacting with the Cromwell
  ☆22Updated 2 years ago
• maxplanck-ie / rna-seq-qc
  Rna-seq pipeline, From FASTQ to differential expression analysis...
  ☆20Updated 8 years ago
• ChristofferFlensburg / superFreq
  Analysis pipeline for cancer sequencing data
  ☆110Updated 9 months ago
• broadinstitute / gtex-viz
  GTEx Visualizations
  ☆64Updated 3 years ago
• hdng / clonevol
  Inferring and visualizing clonal evolution in multi-sample cancer sequencing
  ☆147Updated 4 years ago
• ratschlab / spladder
  Tool for the detection and quantification of alternative splicing events from RNA-Seq data.
  ☆107Updated 6 months ago
• cancerit / cgpBattenberg
  Battenberg algorithm and associated implementation script
  ☆52Updated 4 years ago
• YeoLab / outrigger
  Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data
  ☆65Updated 5 years ago
• TrinityCTAT / Trinity_CTAT
  ☆116Updated last year