BioDepot / RNA-seq-lambdaLinks
Rapid RNA-seq pipeline using AWS lambda functions for alignment
☆13Updated 6 years ago
Alternatives and similar repositories for RNA-seq-lambda
Users that are interested in RNA-seq-lambda are comparing it to the libraries listed below
Sorting:
- RNA-Seq normalization and quantification pipeline☆12Updated last year
- Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…☆71Updated 2 months ago
- main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datase…☆113Updated 2 years ago
- Rails/Docker application for the Broad Institute's single cell RNA-seq data portal☆69Updated 2 weeks ago
- UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline☆42Updated 5 years ago
- Bioinformatics tools for Python☆26Updated 3 weeks ago
- A tool to assess the quality and distribution of genomic data☆17Updated 4 years ago
- Transcript quantification import for modular pipelines☆143Updated 3 months ago
- Cromwell/WDL wrapper for Python☆58Updated 2 years ago
- integrated RNA-seq Analysis Pipeline☆84Updated 6 years ago
- microRNA profiling pipeline☆79Updated 3 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.☆119Updated 6 months ago
- Example Nextflow pipelines and programming techniques☆106Updated 3 months ago
- R package for analyzing single-cell RNA-seq data☆177Updated last year
- Tools for processing UMI RNA-tag data☆131Updated 2 years ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆107Updated last month
- A SingleCell RNASeq pre-processing snakemake workflow☆148Updated 2 years ago
- Open workflow definitions for genomic analysis from MGI at WUSM.☆104Updated 6 months ago
- Tutorials, workflows, and convenience scripts for Single Cell Portal☆50Updated last year
- A Python-based EGA download client☆110Updated last year
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- cfDNA cell type of origin estimation☆34Updated 2 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆148Updated 5 years ago
- GTEx Visualizations☆65Updated 4 years ago
- Documentation and description of AWS iGenomes S3 resource.☆119Updated last year
- MuTect -- Accurate and sensitive cancer mutation detection☆101Updated 2 years ago
- Python implementation of the Loom file format - http://loompy.org☆148Updated last year
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆118Updated this week
- AQUAS TF and histone ChIP-seq pipeline☆111Updated 3 years ago