BioDepot / RNA-seq-lambdaLinks
Rapid RNA-seq pipeline using AWS lambda functions for alignment
☆13Updated 6 years ago
Alternatives and similar repositories for RNA-seq-lambda
Users that are interested in RNA-seq-lambda are comparing it to the libraries listed below
Sorting:
- RNA-Seq normalization and quantification pipeline☆12Updated last year
- Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…☆71Updated 3 months ago
- UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline☆42Updated 5 years ago
- ☆188Updated 2 years ago
- Transcript quantification import for modular pipelines☆143Updated 3 months ago
- integrated RNA-seq Analysis Pipeline☆84Updated 6 years ago
- Bioinformatics tools for Python☆26Updated last month
- NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection☆173Updated 4 years ago
- Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.☆119Updated 7 months ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆202Updated 3 weeks ago
- GATK RNA-Seq Variant Calling in Nextflow☆137Updated 3 years ago
- Documentation and description of AWS iGenomes S3 resource.☆120Updated last year
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆114Updated 6 years ago
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 5 years ago
- Open workflow definitions for genomic analysis from MGI at WUSM.☆104Updated 7 months ago
- Workflows for converting between sequence data formats☆40Updated 4 years ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair☆186Updated this week
- MuTect -- Accurate and sensitive cancer mutation detection☆102Updated 2 years ago
- Example Nextflow pipelines and programming techniques☆106Updated 4 months ago
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆133Updated 6 years ago
- Rails/Docker application for the Broad Institute's single cell RNA-seq data portal☆70Updated this week
- ☆82Updated 7 years ago
- ☆21Updated 7 years ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆73Updated this week
- main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datase …☆114Updated 3 years ago
- The analysis repository for the Open Pediatric Brain Tumor Atlas Project☆106Updated 2 years ago
- Precision HLA typing from next-generation sequencing data☆206Updated last year
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆108Updated 2 months ago
- ☆166Updated 2 weeks ago
- Test data to be used for automated testing with the nf-core pipelines☆150Updated this week