BioDepot / RNA-seq-lambdaLinks
Rapid RNA-seq pipeline using AWS lambda functions for alignment
☆13Updated 6 years ago
Alternatives and similar repositories for RNA-seq-lambda
Users that are interested in RNA-seq-lambda are comparing it to the libraries listed below
Sorting:
- RNA-Seq normalization and quantification pipeline☆12Updated last year
- UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline☆42Updated 5 years ago
- main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datase…☆113Updated 2 years ago
- integrated RNA-seq Analysis Pipeline☆84Updated 6 years ago
- A tool to assess the quality and distribution of genomic data☆17Updated 4 years ago
- Transcript quantification import for modular pipelines☆143Updated 3 months ago
- Workflows for converting between sequence data formats☆40Updated 4 years ago
- Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…☆71Updated 2 months ago
- Bioinformatics tools for Python☆26Updated 3 weeks ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆114Updated 6 years ago
- Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.☆119Updated 6 months ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆107Updated last month
- nucleosome calling using ATAC-seq☆109Updated 5 years ago
- Battenberg algorithm and associated implementation script☆53Updated 5 years ago
- ☆187Updated 2 years ago
- NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection☆173Updated 4 years ago
- Rails/Docker application for the Broad Institute's single cell RNA-seq data portal☆69Updated 2 weeks ago
- AQUAS TF and histone ChIP-seq pipeline☆111Updated 3 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆148Updated 5 years ago
- ☆63Updated 9 years ago
- deconstructSigs☆144Updated 2 years ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆115Updated last year
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆150Updated last year
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- A SingleCell RNASeq pre-processing snakemake workflow☆148Updated 2 years ago
- Open workflow definitions for genomic analysis from MGI at WUSM.☆104Updated 6 months ago
- A tool for bigWig files.☆118Updated 7 years ago
- MuTect -- Accurate and sensitive cancer mutation detection☆101Updated 2 years ago
- microRNA profiling pipeline☆79Updated 3 years ago
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆106Updated 3 years ago