Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens technology.
☆41Dec 16, 2020Updated 5 years ago
Alternatives and similar repositories for MAGeCK
Users that are interested in MAGeCK are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Experimental source code for MAGeCK (Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout)☆20Apr 27, 2015Updated 11 years ago
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆35Jun 8, 2026Updated last month
- A collection of perl scripts for NGS analysis☆17Oct 2, 2024Updated last year
- Analyze CRISPR and shRNA functional genetic screening data☆13Jun 3, 2026Updated last month
- Identify Intra-, Inter-donor variations in bulk or single cell longitudinal dataset☆27Jul 31, 2023Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆18Feb 18, 2021Updated 5 years ago
- ☆18Sep 4, 2024Updated last year
- The R Bioconductor package for scMAGeCK.☆13Jul 10, 2026Updated 2 weeks ago
- GREAT algorithm in Python☆16Oct 24, 2022Updated 3 years ago
- A collection of useful functions for bioinformatics data analysis☆26Mar 19, 2026Updated 4 months ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆53Apr 8, 2022Updated 4 years ago
- Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague☆14Aug 19, 2020Updated 5 years ago
- Website Deployment for CRC User Manual☆13Updated this week
- Advanced steps of the OSCA book☆14Apr 27, 2026Updated 2 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆12Sep 4, 2019Updated 6 years ago
- Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publicatio…☆13Jan 14, 2023Updated 3 years ago
- ☆16Apr 11, 2022Updated 4 years ago
- ☆16Feb 11, 2024Updated 2 years ago
- Gain biological insights using LLM.☆15Jan 26, 2026Updated 6 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆27Oct 17, 2024Updated last year
- XEnograft Visualization & Analysis☆11Oct 18, 2025Updated 9 months ago
- Supporting information of 'Single-cell RNA sequencing of a European and an African lymphoblastoid cell line'☆11Feb 27, 2020Updated 6 years ago
- Vim syntax highlighting for WDL☆20Jul 28, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Flexible analysis of high-content CRISPR screening☆33Mar 6, 2026Updated 4 months ago
- Systematic Multi-Trait AAV Capsid Engineering for Efficient Gene Delivery (Eid et al., Nature Communications, 2024)☆13Aug 26, 2024Updated last year
- This repository contains all the books for data science☆11May 3, 2022Updated 4 years ago
- ☆20Feb 23, 2022Updated 4 years ago
- meta-analysis of new and published human WAT single cell data☆15Mar 12, 2025Updated last year
- R/Bioconductor package including the Gene Expression Signature Search (GESS), Function Enrichment Analysis (FEA) methods and supporting d…☆24Mar 22, 2026Updated 4 months ago
- ☆21Apr 20, 2026Updated 3 months ago
- Github Pages☆12Apr 29, 2024Updated 2 years ago
- ☆11Aug 18, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- tumor - cancer cell line alignment. Use it on the depmap portal or install it with pip.☆13Dec 5, 2023Updated 2 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆82Mar 1, 2026Updated 4 months ago
- Auto-annotations from Mouse brain development☆12Jul 11, 2020Updated 6 years ago
- ☆12May 16, 2020Updated 6 years ago
- ☆14Mar 17, 2026Updated 4 months ago
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆16Feb 24, 2017Updated 9 years ago
- Cluster Identity Predictor (R package implementation)☆22Mar 8, 2022Updated 4 years ago