Alternatives and similar repositories for Dino4Cells_analysis

Users that are interested in Dino4Cells_analysis are comparing it to the libraries listed below

• peng-lab / BaSiCPy
  ☆87Updated 5 months ago
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆67Updated 11 months ago
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆64Updated this week
• JacobHanimann / scDINO
  Self-Supervised Vision Transformers for multiplexed imaging datasets
  ☆54Updated last year
• glencoesoftware / bioformats2raw
  Bio-Formats image file format to raw format converter
  ☆97Updated last week
• mehta-lab / dynamorph
  Learn morphological states of dynamic cells
  ☆12Updated 2 years ago
• nygctech / PICASSO
  Development of PICASSO plugin for napari
  ☆17Updated 2 years ago
• stardist / stardist-napari
  StarDist plugin for napari
  ☆39Updated last year
• VasylVaskivskyi / microaligner
  Image registration (alignment) software for large microscopy images
  ☆25Updated last year
• bioimage-io / core-bioimage-io-python
  Python libraries for loading, running and packaging bioimage.io models
  ☆33Updated last week
• KerenLab / CellSighter
  ☆34Updated last year
• labsyspharm / ashlar
  ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
  ☆151Updated 3 weeks ago
• glencoesoftware / raw2ometiff
  Raw format to OME-TIFF converter
  ☆55Updated 3 weeks ago
• joonkeekim / mediar-napari
  ☆20Updated last year
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆61Updated 3 months ago
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆37Updated last year
• murphygroup / CellSegmentationEvaluator
  Evaluating the quality of a cell segmentation method without reference.
  ☆12Updated last month
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆87Updated last week
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆31Updated last week
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆29Updated this week
• KristinaUlicna / DeepTree
  Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.
  ☆30Updated 4 years ago
• fractal-analytics-platform / fractal-client
  Command-line client for Fractal
  ☆46Updated last week
• Euro-BioImaging / EuBI-Bridge
  A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…
  ☆11Updated this week
• rosalindfranklininstitute / RedLionfish
  ☆32Updated last year
• ome / ngff
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆137Updated 3 weeks ago
• TheJacksonLaboratory / dask_relabeling
  A relabeling tool for tiled segmentation with Dask
  ☆16Updated 11 months ago
• AllenCell / aics-ml-segmentation
  ☆32Updated last month
• weigertlab / spotiflow
  Accurate and efficient spot detection for microscopy data
  ☆95Updated 3 weeks ago
• bioio-devs / bioio
  Image reading, metadata management, and image writing for Microscopy images in Python
  ☆100Updated this week
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆124Updated this week